Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3895

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3894: 12262 - SUPERFAMILY--SSF54695, at 842449 to 843578 12262 mRNA_3895: 12263 - Hypothetical Protein, at 844130 to 844681 12263 mRNA_3896: 12264 - BLAST F-box domain containing protein [Metarhizium maju..., at 844807 to 845932 12264

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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843,200 - 12262 mRNA_3894 0.66 0.9
843,417 - 12262 mRNA_3894 0.86 -0.7
843,474 + 2.6
843,479 - 1.0
843,481 + 0.0
843,481 + -0.1
843,606 - 1.7
843,621 - 1.3
843,623 - 0.5
843,627 + 2.2
843,647 - 0.4
843,723 - 0.6
843,747 - 1.1
843,757 - 0.5
843,908 - -1.6
843,941 + 1.1
844,047 - 0.8
844,055 - 0.5
844,056 + -1.1
844,071 + -0.5
844,143 + 0.8
844,198 + 12263 mRNA_3895 0.12 2.6
844,332 - 12263 mRNA_3895 0.37 -2.6
844,340 + 12263 mRNA_3895 0.38 2.0
844,365 - 12263 mRNA_3895 0.43 0.0
844,370 - 12263 mRNA_3895 0.43 0.8
844,371 + 12263 mRNA_3895 0.44 0.8
844,385 + 12263 mRNA_3895 0.46 0.4
844,392 + 12263 mRNA_3895 0.47 1.9
844,410 - 12263 mRNA_3895 0.51 -0.7
844,423 - 12263 mRNA_3895 0.53 -0.2
844,543 + 12263 mRNA_3895 0.75 -0.2
844,665 - -0.6
844,671 - 2.2
844,678 + -1.9
844,699 + -0.6
844,708 + 0.3
844,709 + 1.8
844,711 - -0.6
844,713 + 0.2
845,136 - 12264 mRNA_3896 0.29 0.4
845,300 - 12264 mRNA_3896 0.44 0.4
845,431 + 12264 mRNA_3896 0.55 0.8