Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3888

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826218 to 829062 12255 mRNA_3888: 12256 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 829400 to 831173 12256 mRNA_3889: 12257 - K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase, at 831384 to 832562 12257

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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828,736 - 12255 mRNA_3887 0.89 -0.9
829,062 - -0.0
829,239 - 0.3
829,240 + -1.1
829,280 + 0.4
829,390 - 0.5
829,646 + 12256 mRNA_3888 0.14 0.1
829,710 + 12256 mRNA_3888 0.17 -0.8
829,812 - 12256 mRNA_3888 0.23 -1.0
830,089 - 12256 mRNA_3888 0.39 -0.2
830,092 + 12256 mRNA_3888 0.39 1.0
830,128 - 12256 mRNA_3888 0.41 -0.6
830,264 - 12256 mRNA_3888 0.49 1.0
830,790 + 12256 mRNA_3888 0.78 -2.7
830,981 - 12256 mRNA_3888 0.89 1.2
831,093 - -1.2
831,164 + 0.3
831,224 + -0.7
831,232 - -1.2
831,232 - 0.6
831,239 + 2.1
831,242 - -1.6
831,246 + -1.0
831,251 - 2.8
831,254 - 0.5
831,260 - -0.1
831,261 + 0.4
831,263 + 0.8
831,264 + 1.1
831,276 + 0.4
831,288 + -0.4
831,293 - -0.2
831,300 - -1.8
831,314 - -0.0
831,316 - 0.9
831,320 - -0.4
831,351 - -0.5
831,354 - 1.0
831,365 - -0.4
831,435 - -1.3
831,614 - 12257 mRNA_3889 0.20 -2.6
831,777 + 12257 mRNA_3889 0.33 -1.1
831,855 + 12257 mRNA_3889 0.40 -2.4
832,169 + 12257 mRNA_3889 0.67 -0.7