Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3886

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822787 to 823648 12253 mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823913 to 825750 12254 mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826218 to 829062 12255

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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823,082 + 12253 mRNA_3885 0.34 -1.2
823,096 + 12253 mRNA_3885 0.36 -1.2
823,237 + 12253 mRNA_3885 0.52 0.7
823,241 + 12253 mRNA_3885 0.53 0.3
823,309 + 12253 mRNA_3885 0.61 0.8
823,551 + 12253 mRNA_3885 0.89 -0.7
823,699 - -0.9
824,026 - 1.0
824,306 - 12254 mRNA_3886 0.21 -2.3
824,402 + 12254 mRNA_3886 0.27 -2.0
824,405 - 12254 mRNA_3886 0.27 0.5
824,421 - 12254 mRNA_3886 0.28 -0.4
825,186 - 12254 mRNA_3886 0.69 -0.9
825,459 + 12254 mRNA_3886 0.84 0.2
825,879 - -0.2
825,896 + 0.5
825,896 + -0.3
825,897 - -1.0
825,908 - -0.5
825,927 - 0.2
825,934 + -0.4
825,939 + -0.6
826,041 + -0.6
826,049 + -0.0
826,050 - 0.6
826,052 + -1.5
826,122 + -0.1
826,138 - -0.2
826,149 - -0.1
826,156 + -1.6
826,157 - 0.1
826,169 - 1.6
826,302 + 0.1
826,307 - -1.0
826,338 + -0.6
826,451 + 1.1
826,464 + -0.9
826,470 - 0.4
826,489 - 0.1
826,594 - 12255 mRNA_3887 0.13 0.4
826,627 + 12255 mRNA_3887 0.14 -0.2