Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3880

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3879: 12247 - Interpro Selenoprotein SelK_SelG, at 811174 to 811650 12247 mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812217 to 813988 12248 mRNA_3881: 12249 - Hypothetical Protein, at 814368 to 814862 12249

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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811,271 + 12247 mRNA_3879 0.20 -0.7
811,297 - 12247 mRNA_3879 0.26 0.8
811,303 - 12247 mRNA_3879 0.27 -0.7
811,593 - 12247 mRNA_3879 0.88 0.2
811,603 - 0.2
811,625 + -1.8
812,620 + 12248 mRNA_3880 0.23 -1.2
812,764 + 12248 mRNA_3880 0.31 -0.4
812,788 + 12248 mRNA_3880 0.32 -1.2
813,371 - 12248 mRNA_3880 0.65 -1.7
813,668 + 12248 mRNA_3880 0.82 -2.4
813,906 - 0.2
813,937 + -1.5
814,071 + -0.8
814,073 + 2.1
814,079 - -0.6
814,086 - -0.3
814,086 - -1.5
814,093 - -0.5
814,094 + -1.2
814,095 + 0.9
814,098 - 0.6
814,110 - 1.1
814,113 + -0.8
814,119 - -0.3
814,121 + 1.2
814,128 + -1.3
814,137 - 1.1
814,138 - -0.3
814,144 + 0.2
814,152 - -0.1
814,154 - -0.7
814,162 + -0.0
814,162 - 0.8
814,171 - -2.6
814,189 - 0.2
814,197 + -1.3
814,304 + -0.7
814,305 - 0.9
814,316 + 0.4
814,317 - -0.3
814,320 - 1.2
814,333 + 0.3
814,334 + -0.1
814,356 + 0.5
814,386 - -0.9
814,398 - 0.0
814,402 - 0.2
814,405 + -1.4
814,421 - 12249 mRNA_3881 0.11 -0.9
814,422 + 12249 mRNA_3881 0.11 -1.8
814,472 - 12249 mRNA_3881 0.21 -2.4
814,477 + 12249 mRNA_3881 0.22 -1.1
814,478 - 12249 mRNA_3881 0.22 -0.5
814,492 - 12249 mRNA_3881 0.25 0.1
814,492 + 12249 mRNA_3881 0.25 0.0
814,499 + 12249 mRNA_3881 0.26 -0.9
814,506 - 12249 mRNA_3881 0.28 -0.1
814,529 - 12249 mRNA_3881 0.33 0.1
814,539 + 12249 mRNA_3881 0.35 -0.0
814,582 - 12249 mRNA_3881 0.43 -0.7
814,651 - 12249 mRNA_3881 0.57 -0.1
814,799 - 12249 mRNA_3881 0.87 -2.3
814,806 - 12249 mRNA_3881 0.88 0.6
814,806 - 12249 mRNA_3881 0.88 0.1
814,942 + -0.1
814,943 - 0.5
814,951 - 0.1
814,973 + -0.5