Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3872

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792939 to 793930 12239 mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794856 to 799909 12240 mRNA_3873: 12241 - BLAST putative protein [Neurospora crassa], at 800106 to 800939 12241

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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794,074 + -0.8
794,101 + -1.0
794,101 + 0.6
794,193 + -0.9
794,211 - 0.5
794,484 - -1.5
794,488 - 0.8
794,500 + 0.1
794,657 - 1.6
794,671 - 0.8
794,673 + -0.7
794,691 - 1.1
794,696 - 1.3
794,841 + 0.1
794,972 + -0.1
794,974 + 0.5
794,983 - 1.2
794,997 + 2.1
795,115 - 0.5
795,166 - 0.6
795,552 + 12240 mRNA_3872 0.14 -0.6
795,582 - 12240 mRNA_3872 0.14 0.4
795,726 + 12240 mRNA_3872 0.17 -1.0
795,912 + 12240 mRNA_3872 0.21 0.4
796,154 + 12240 mRNA_3872 0.26 0.8
796,297 - 12240 mRNA_3872 0.29 -2.6
796,314 + 12240 mRNA_3872 0.29 0.0
796,410 + 12240 mRNA_3872 0.31 0.6
796,428 - 12240 mRNA_3872 0.31 -2.1
796,446 + 12240 mRNA_3872 0.31 1.6
796,446 + 12240 mRNA_3872 0.31 -1.1
796,811 + 12240 mRNA_3872 0.39 -1.9
796,989 + 12240 mRNA_3872 0.42 -1.4
797,701 + 12240 mRNA_3872 0.56 1.1
797,756 - 12240 mRNA_3872 0.57 -0.2
797,990 + 12240 mRNA_3872 0.62 0.5
798,444 - 12240 mRNA_3872 0.71 -0.7
798,501 - 12240 mRNA_3872 0.72 -0.8
798,721 + 12240 mRNA_3872 0.76 -1.6
798,736 + 12240 mRNA_3872 0.77 -1.0
798,910 + 12240 mRNA_3872 0.80 2.0
799,203 - 12240 mRNA_3872 0.86 -0.3
799,207 - 12240 mRNA_3872 0.86 1.2
799,606 - -1.2
800,119 + -0.1
800,362 - 12241 mRNA_3873 0.31 1.0
800,372 + 12241 mRNA_3873 0.32 -0.4
800,537 - 12241 mRNA_3873 0.52 -0.9
800,689 - 12241 mRNA_3873 0.70 0.0
800,696 + 12241 mRNA_3873 0.71 0.7
800,696 + 12241 mRNA_3873 0.71 0.4
800,729 + 12241 mRNA_3873 0.75 0.1
800,781 - 12241 mRNA_3873 0.81 2.4
800,841 - 12241 mRNA_3873 0.88 1.0
800,845 + 12241 mRNA_3873 0.89 0.1
800,881 - 1.2