Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3871

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789914 to 792634 12238 mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792939 to 793930 12239 mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794856 to 799909 12240

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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792,079 - 12238 mRNA_3870 0.80 1.6
792,143 + 12238 mRNA_3870 0.82 -0.3
792,238 - 12238 mRNA_3870 0.85 -2.9
792,240 + 12238 mRNA_3870 0.85 -1.4
792,245 - 12238 mRNA_3870 0.86 -0.2
792,246 - 12238 mRNA_3870 0.86 -0.8
792,264 - 12238 mRNA_3870 0.86 -0.2
792,403 - 0.4
792,405 + 0.5
792,419 + -1.4
792,420 - -0.3
792,548 + 0.4
792,553 + -0.8
792,560 - 0.2
792,595 - 0.0
792,608 - -0.0
792,680 - -0.8
792,698 - -0.1
792,700 - 0.9
792,731 - -0.3
792,733 + -0.7
792,757 - 1.0
792,765 + 0.2
792,856 + -1.0
792,879 + -0.8
792,900 - -0.1
792,938 - -0.6
792,950 - 0.1
792,951 + -2.1
793,072 + 12239 mRNA_3871 0.13 0.5
793,240 - 12239 mRNA_3871 0.30 -1.4
793,269 - 12239 mRNA_3871 0.33 -0.0
793,361 + 12239 mRNA_3871 0.43 0.5
793,376 - 12239 mRNA_3871 0.44 0.5
793,423 + 12239 mRNA_3871 0.49 0.4
793,449 - 12239 mRNA_3871 0.51 0.5
793,491 - 12239 mRNA_3871 0.56 0.3
793,498 - 12239 mRNA_3871 0.56 0.8
793,506 + 12239 mRNA_3871 0.57 0.2
793,507 + 12239 mRNA_3871 0.57 0.7
793,518 + 12239 mRNA_3871 0.58 1.2
793,525 + 12239 mRNA_3871 0.59 1.3
793,677 - 12239 mRNA_3871 0.74 1.2
793,710 - 12239 mRNA_3871 0.78 -1.5
793,744 - 12239 mRNA_3871 0.81 -2.6
793,795 + 12239 mRNA_3871 0.86 2.1
793,805 + 12239 mRNA_3871 0.87 0.1
793,843 - 0.4
794,074 + -0.8
794,101 + -1.0
794,101 + 0.6
794,193 + -0.9
794,211 - 0.5
794,484 - -1.5
794,488 - 0.8
794,500 + 0.1
794,657 - 1.6
794,671 - 0.8
794,673 + -0.7
794,691 - 1.1
794,696 - 1.3
794,841 + 0.1