Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3864

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769821 to 771118 12231 mRNA_3864: 12232 - K08737 MSH6 DNA mismatch repair protein MSH6, at 771424 to 775679 12232

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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770,795 - 12231 mRNA_3863 0.75 -1.5
770,994 - 0.8
771,394 - -1.5
771,430 + 0.6
771,542 + 0.1
771,549 - -0.4
771,550 - 0.5
771,602 + -0.4
771,616 + 1.2
771,720 - -2.1
771,862 + 12232 mRNA_3864 0.10 -0.7
772,017 + 12232 mRNA_3864 0.14 -0.7
772,128 + 12232 mRNA_3864 0.17 0.3
772,209 - 12232 mRNA_3864 0.18 0.2
772,306 - 12232 mRNA_3864 0.21 -0.8
772,354 - 12232 mRNA_3864 0.22 -0.9
772,355 + 12232 mRNA_3864 0.22 -0.4
772,487 + 12232 mRNA_3864 0.25 0.1
772,634 - 12232 mRNA_3864 0.28 0.1
772,643 + 12232 mRNA_3864 0.29 0.5
772,657 + 12232 mRNA_3864 0.29 1.2
772,745 - 12232 mRNA_3864 0.31 1.5
772,866 + 12232 mRNA_3864 0.34 2.8
772,973 + 12232 mRNA_3864 0.36 1.0
772,981 + 12232 mRNA_3864 0.37 0.8
772,988 + 12232 mRNA_3864 0.37 0.9
773,051 + 12232 mRNA_3864 0.38 0.5
773,051 + 12232 mRNA_3864 0.38 0.2
773,273 - 12232 mRNA_3864 0.43 2.6
773,370 + 12232 mRNA_3864 0.46 1.2
773,378 + 12232 mRNA_3864 0.46 0.2
773,483 - 12232 mRNA_3864 0.48 -0.4
773,504 + 12232 mRNA_3864 0.49 0.4
773,662 + 12232 mRNA_3864 0.53 -0.0
773,662 + 12232 mRNA_3864 0.53 -0.7
773,771 - 12232 mRNA_3864 0.55 0.9
773,801 + 12232 mRNA_3864 0.56 -1.2
773,869 - 12232 mRNA_3864 0.57 0.7
773,968 - 12232 mRNA_3864 0.60 0.8
774,049 + 12232 mRNA_3864 0.62 0.6
774,083 - 12232 mRNA_3864 0.62 1.1
774,231 - 12232 mRNA_3864 0.66 2.1
774,250 + 12232 mRNA_3864 0.66 0.6
774,250 + 12232 mRNA_3864 0.66 0.9
774,359 + 12232 mRNA_3864 0.69 1.1
774,360 - 12232 mRNA_3864 0.69 1.4
774,796 - 12232 mRNA_3864 0.79 1.8
774,902 + 12232 mRNA_3864 0.82 0.6
774,957 - 12232 mRNA_3864 0.83 0.6
775,053 + 12232 mRNA_3864 0.85 -0.1
775,089 - 12232 mRNA_3864 0.86 0.5
775,200 - 12232 mRNA_3864 0.89 -1.6
775,375 - -2.5
775,392 + -1.2
775,394 - -0.5
775,642 - -0.3
775,642 - 1.2
775,762 - 3.0
775,969 - -2.3
776,373 - 1.0
776,526 + 1.1
776,547 + -0.6
776,648 - -0.9
776,653 - 1.9
776,657 - -0.2
776,660 - 0.1
776,677 + -2.1