Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3843

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716088 to 718591 12209 mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718852 to 719357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719514 to 723213 12211 mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723329 to 725612 12212

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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718,527 - 1.4
718,789 - 1.4
718,822 + 0.9
718,847 + -1.2
718,929 + 12210 mRNA_3842 0.15 0.4
718,962 - 12210 mRNA_3842 0.22 -0.9
718,970 + 12210 mRNA_3842 0.23 -1.3
718,998 - 12210 mRNA_3842 0.29 -0.9
719,110 - 12210 mRNA_3842 0.51 -1.5
719,119 + 12210 mRNA_3842 0.53 -2.3
719,136 + 12210 mRNA_3842 0.56 -0.6
719,272 - 12210 mRNA_3842 0.83 -0.6
719,318 + -0.9
719,396 - -0.3
719,569 - -1.1
719,590 - -1.0
720,019 - 12211 mRNA_3843 0.14 0.1
720,536 + 12211 mRNA_3843 0.28 0.8
720,570 - 12211 mRNA_3843 0.29 0.3
720,574 - 12211 mRNA_3843 0.29 -0.2
720,583 - 12211 mRNA_3843 0.29 0.6
720,597 - 12211 mRNA_3843 0.29 -0.3
720,697 - 12211 mRNA_3843 0.32 1.3
720,713 + 12211 mRNA_3843 0.32 1.9
720,740 + 12211 mRNA_3843 0.33 0.7
720,825 + 12211 mRNA_3843 0.35 0.6
720,876 - 12211 mRNA_3843 0.37 -0.2
721,019 - 12211 mRNA_3843 0.41 0.1
721,160 - 12211 mRNA_3843 0.44 1.5
721,305 - 12211 mRNA_3843 0.48 -0.1
721,470 - 12211 mRNA_3843 0.53 -1.7
721,496 + 12211 mRNA_3843 0.54 -1.6
721,755 + 12211 mRNA_3843 0.61 -0.1
721,771 + 12211 mRNA_3843 0.61 -0.4
721,897 + 12211 mRNA_3843 0.64 -1.1
721,927 - 12211 mRNA_3843 0.65 0.1
722,179 - 12211 mRNA_3843 0.72 -1.5
722,208 + 12211 mRNA_3843 0.73 0.3
722,347 + 12211 mRNA_3843 0.77 1.2
722,480 - 12211 mRNA_3843 0.80 0.5
722,503 + 12211 mRNA_3843 0.81 0.5
722,505 + 12211 mRNA_3843 0.81 1.2
722,732 - 12211 mRNA_3843 0.87 -1.7
722,776 + 12211 mRNA_3843 0.88 -1.5
722,943 + -2.1
723,055 - -0.3
723,639 - 12212 mRNA_3844 0.14 -1.2
723,696 - 12212 mRNA_3844 0.16 1.1
724,082 - 12212 mRNA_3844 0.33 -0.1
724,108 + 12212 mRNA_3844 0.34 -0.3
724,141 + 12212 mRNA_3844 0.36 1.1