Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3842

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716088 to 718591 12209 mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718852 to 719357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719514 to 723213 12211

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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718,086 - 12209 mRNA_3841 0.80 -0.6
718,092 - 12209 mRNA_3841 0.80 0.4
718,527 - 1.4
718,789 - 1.4
718,822 + 0.9
718,847 + -1.2
718,929 + 12210 mRNA_3842 0.15 0.4
718,962 - 12210 mRNA_3842 0.22 -0.9
718,970 + 12210 mRNA_3842 0.23 -1.3
718,998 - 12210 mRNA_3842 0.29 -0.9
719,110 - 12210 mRNA_3842 0.51 -1.5
719,119 + 12210 mRNA_3842 0.53 -2.3
719,136 + 12210 mRNA_3842 0.56 -0.6
719,272 - 12210 mRNA_3842 0.83 -0.6
719,318 + -0.9
719,396 - -0.3
719,569 - -1.1
719,590 - -1.0
720,019 - 12211 mRNA_3843 0.14 0.1