Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3816

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3815: 12183 - K06631 PLK1 polo-like kinase 1, at 644354 to 647784 12183 mRNA_3816: 12184 - KOG3613 Dopey and related predicted leucine zipper transcription factors, at 648075 to 655221 12184 mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655525 to 657844 12185

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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647,270 + 12183 mRNA_3815 0.85 -0.9
648,244 + 0.8
648,326 - 1.0
648,362 - 1.9
648,420 + 1.7
648,523 - 0.8
648,535 - -0.4
648,739 - -0.1
648,791 - 12184 mRNA_3816 0.10 0.3
648,854 + 12184 mRNA_3816 0.11 -0.0
648,989 + 12184 mRNA_3816 0.13 1.7
649,019 - 12184 mRNA_3816 0.13 -1.4
649,120 - 12184 mRNA_3816 0.15 1.4
649,363 - 12184 mRNA_3816 0.18 0.6
649,464 + 12184 mRNA_3816 0.19 0.5
649,561 - 12184 mRNA_3816 0.21 2.5
649,576 + 12184 mRNA_3816 0.21 1.4
649,665 + 12184 mRNA_3816 0.22 0.6
650,007 + 12184 mRNA_3816 0.27 0.9
650,120 - 12184 mRNA_3816 0.29 2.3
650,144 - 12184 mRNA_3816 0.29 0.0
650,665 - 12184 mRNA_3816 0.36 0.4
650,911 - 12184 mRNA_3816 0.40 -0.4
650,950 + 12184 mRNA_3816 0.40 0.6
650,950 - 12184 mRNA_3816 0.40 0.6
650,950 - 12184 mRNA_3816 0.40 1.6
651,044 + 12184 mRNA_3816 0.42 -0.8
651,088 + 12184 mRNA_3816 0.42 0.4
651,255 + 12184 mRNA_3816 0.44 -0.3
651,496 + 12184 mRNA_3816 0.48 0.5
651,496 + 12184 mRNA_3816 0.48 -0.8
651,534 + 12184 mRNA_3816 0.48 0.1
651,579 + 12184 mRNA_3816 0.49 0.3
651,792 - 12184 mRNA_3816 0.52 -2.5
651,959 - 12184 mRNA_3816 0.54 0.3
652,388 - 12184 mRNA_3816 0.60 0.3
652,468 + 12184 mRNA_3816 0.61 1.4
653,021 + 12184 mRNA_3816 0.69 2.0
653,114 - 12184 mRNA_3816 0.71 -1.0
653,148 - 12184 mRNA_3816 0.71 0.4
653,268 + 12184 mRNA_3816 0.73 0.4
653,333 + 12184 mRNA_3816 0.74 -0.0
653,347 - 12184 mRNA_3816 0.74 -0.5
653,355 + 12184 mRNA_3816 0.74 2.3
653,432 + 12184 mRNA_3816 0.75 0.7
653,486 + 12184 mRNA_3816 0.76 0.1
653,512 - 12184 mRNA_3816 0.76 -0.2
653,896 + 12184 mRNA_3816 0.81 0.6
654,319 + 12184 mRNA_3816 0.87 0.1
654,630 + 1.2
654,720 + 0.5
654,874 - 0.7
654,877 - -0.2
654,903 - 2.1
655,022 - 0.5
655,026 - 1.7
655,039 + 1.7
655,150 - 2.1
655,169 + -0.4
655,179 + -0.3
655,185 - -0.8
655,191 + 1.0
655,195 + -1.5
655,211 - 2.3
655,342 - 0.2
655,496 - 2.0
655,507 - 0.2
655,538 - 1.2
655,564 - -0.3
655,771 - 12185 mRNA_3817 0.11 -0.7
655,833 - 12185 mRNA_3817 0.13 -0.8
656,113 - 12185 mRNA_3817 0.25 -1.2