Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3811

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3810: 12178 - K12869 CRN, CRNKL1, CLF1, SYF3 crooked neck, at 632455 to 635215 12178 mRNA_3811: 12179 - Hypothetical Protein, at 635575 to 638591 12179 mRNA_3812: 12180 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 638841 to 639831 12180

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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635,265 + -0.9
635,521 + -0.2
635,530 - 0.2
635,534 - -0.8
635,557 - -0.4
635,604 - 0.6
635,613 + -0.5
635,634 + 1.2
635,638 + -1.1
635,644 + -0.4
635,757 - -0.1
635,761 - -0.9
635,761 + 0.0
635,765 - 0.4
635,776 + 0.3
635,779 + 1.2
635,918 - 12179 mRNA_3811 0.11 -0.3
635,927 - 12179 mRNA_3811 0.12 -0.5
635,927 + 12179 mRNA_3811 0.12 -0.0
636,092 - 12179 mRNA_3811 0.17 0.6
636,092 - 12179 mRNA_3811 0.17 -0.4
636,095 + 12179 mRNA_3811 0.17 -1.6
636,095 + 12179 mRNA_3811 0.17 -1.9
636,231 - 12179 mRNA_3811 0.22 0.6
636,550 + 12179 mRNA_3811 0.32 -0.4
636,714 + 12179 mRNA_3811 0.38 -1.2
636,807 - 12179 mRNA_3811 0.41 0.7
637,165 + 12179 mRNA_3811 0.53 -0.8
637,192 + 12179 mRNA_3811 0.54 -1.4
637,377 + 12179 mRNA_3811 0.60 0.4
637,461 + 12179 mRNA_3811 0.63 -1.7
637,585 - 12179 mRNA_3811 0.67 0.5
637,776 - 12179 mRNA_3811 0.73 2.0
638,387 - 0.1
638,548 + 0.2
638,683 - 1.0
638,708 - 0.9
638,723 - 0.4
638,732 + 0.7
638,752 + 0.4
638,810 - -0.2
639,118 + 12180 mRNA_3812 0.28 -0.9
639,312 - 12180 mRNA_3812 0.48 1.4
639,452 + 12180 mRNA_3812 0.62 -0.3
639,578 + 12180 mRNA_3812 0.74 1.7