Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3759

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3758: 12126 - HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208, at 515718 to 518534 12126 mRNA_3759: 12127 - Hypothetical Protein, at 518621 to 520492 12127 mRNA_3760: 12128 - K10746 EXO1 exonuclease 1, at 521061 to 522364 12128

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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517,679 + 12126 mRNA_3758 0.70 0.7
517,864 - 12126 mRNA_3758 0.76 -0.8
517,868 - 12126 mRNA_3758 0.76 -0.1
517,879 + 12126 mRNA_3758 0.77 -1.6
517,981 + 12126 mRNA_3758 0.80 -0.4
517,987 - 12126 mRNA_3758 0.81 -0.4
518,191 + 12126 mRNA_3758 0.88 -0.6
518,314 - -0.1
518,461 - 0.1
518,463 - -0.5
518,468 + -0.6
518,591 + -0.7
518,614 - -0.1
518,618 + -0.6
518,622 + 0.2
518,632 - 0.9
518,632 - 0.8
518,653 - -0.9
518,772 + 0.8
518,790 + 1.7
518,818 - 12127 mRNA_3759 0.11 1.3
518,819 + 12127 mRNA_3759 0.11 0.5
518,821 - 12127 mRNA_3759 0.11 0.2
518,826 + 12127 mRNA_3759 0.11 0.1
518,826 + 12127 mRNA_3759 0.11 0.4
519,024 - 12127 mRNA_3759 0.22 1.5
519,084 + 12127 mRNA_3759 0.25 -0.4
519,085 + 12127 mRNA_3759 0.25 -0.4
519,192 + 12127 mRNA_3759 0.31 0.0
519,247 + 12127 mRNA_3759 0.33 0.8
519,644 + 12127 mRNA_3759 0.55 -2.5
519,790 + 12127 mRNA_3759 0.62 1.0
520,093 - 12127 mRNA_3759 0.79 0.1
520,100 - 12127 mRNA_3759 0.79 -0.3
520,233 - 12127 mRNA_3759 0.86 -0.8
520,243 + 12127 mRNA_3759 0.87 -0.2
520,433 - 0.5
520,713 - 1.2
520,965 - -0.9
521,233 + 12128 mRNA_3760 0.13 -0.1