Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3752

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3751: 12119 - K11348 BRPF1 bromodomain and PHD finger-containing protein 1, at 499022 to 503388 12119 mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503579 to 505478 12120 mRNA_3753: 12121 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 505655 to 508720 12121

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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502,715 - 12119 mRNA_3751 0.85 -0.2
502,752 + 12119 mRNA_3751 0.85 0.3
503,338 + -1.6
503,447 - 0.5
503,453 - 0.6
503,466 - 0.2
503,478 - 0.3
503,496 + -1.5
503,505 + 0.8
503,510 + -0.2
503,517 - 0.2
503,520 + 0.6
503,520 + -0.1
503,522 + 0.2
503,523 + -0.9
503,529 + -0.0
503,622 + -2.0
503,624 - -0.7
503,647 - 0.6
503,698 + -1.0
503,806 + 12120 mRNA_3752 0.12 0.7
503,813 - 12120 mRNA_3752 0.12 0.5
504,079 - 12120 mRNA_3752 0.26 2.8
504,108 + 12120 mRNA_3752 0.28 0.2
504,553 - 12120 mRNA_3752 0.51 -1.5
504,708 + 12120 mRNA_3752 0.59 -0.1
504,779 - 12120 mRNA_3752 0.63 0.6
504,806 + 12120 mRNA_3752 0.65 -1.2
504,861 - 12120 mRNA_3752 0.67 0.3
505,449 + -0.7
505,736 - 1.3
505,880 - -0.7
506,282 + 12121 mRNA_3753 0.20 1.7
506,299 - 12121 mRNA_3753 0.21 1.7
506,301 - 12121 mRNA_3753 0.21 1.9