Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3751

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3750: 12118 - K13421 UMPS uridine monophosphate synthetase, at 497780 to 498794 12118 mRNA_3751: 12119 - K11348 BRPF1 bromodomain and PHD finger-containing protein 1, at 499022 to 503388 12119 mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503579 to 505478 12120

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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498,806 - -1.7
498,938 + 2.0
499,386 - 0.0
499,387 - -1.0
499,520 - 12119 mRNA_3751 0.11 0.3
499,636 + 12119 mRNA_3751 0.14 0.5
499,671 - 12119 mRNA_3751 0.15 -0.3
499,687 - 12119 mRNA_3751 0.15 -0.5
499,826 + 12119 mRNA_3751 0.18 -2.0
499,846 - 12119 mRNA_3751 0.19 0.0
499,948 + 12119 mRNA_3751 0.21 0.1
500,768 + 12119 mRNA_3751 0.40 2.9
500,976 - 12119 mRNA_3751 0.45 -0.4
501,156 + 12119 mRNA_3751 0.49 0.1
501,357 - 12119 mRNA_3751 0.53 -1.7
501,357 - 12119 mRNA_3751 0.53 -0.5
501,364 + 12119 mRNA_3751 0.54 -1.0
501,367 - 12119 mRNA_3751 0.54 -2.2
501,408 - 12119 mRNA_3751 0.55 0.5
501,422 - 12119 mRNA_3751 0.55 1.2
501,531 - 12119 mRNA_3751 0.57 -1.1
501,721 + 12119 mRNA_3751 0.62 0.5
501,729 - 12119 mRNA_3751 0.62 0.2
501,891 - 12119 mRNA_3751 0.66 -0.3
502,161 - 12119 mRNA_3751 0.72 -1.1
502,279 - 12119 mRNA_3751 0.75 0.2
502,300 + 12119 mRNA_3751 0.75 -3.0
502,321 + 12119 mRNA_3751 0.76 3.2
502,450 + 12119 mRNA_3751 0.78 -1.4
502,715 - 12119 mRNA_3751 0.85 -0.2
502,752 + 12119 mRNA_3751 0.85 0.3
503,338 + -1.6
503,447 - 0.5
503,453 - 0.6
503,466 - 0.2
503,478 - 0.3
503,496 + -1.5
503,505 + 0.8
503,510 + -0.2
503,517 - 0.2
503,520 + 0.6
503,520 + -0.1
503,522 + 0.2
503,523 + -0.9
503,529 + -0.0
503,622 + -2.0
503,624 - -0.7
503,647 - 0.6
503,698 + -1.0
503,806 + 12120 mRNA_3752 0.12 0.7
503,813 - 12120 mRNA_3752 0.12 0.5
504,079 - 12120 mRNA_3752 0.26 2.8
504,108 + 12120 mRNA_3752 0.28 0.2