Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3742

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470340 to 473925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474492 to 476469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476780 to 478513 12111

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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474,092 - 0.6
474,873 - 12110 mRNA_3742 0.19 -0.8
474,940 + 12110 mRNA_3742 0.23 -1.6
474,970 - 12110 mRNA_3742 0.24 -2.6
475,237 + 12110 mRNA_3742 0.38 -1.5
475,561 + 12110 mRNA_3742 0.54 -0.0
475,797 - 12110 mRNA_3742 0.66 4.0
476,274 + -0.7
476,501 - -2.0
476,545 + -1.7
476,550 + 0.1
476,724 - -0.5
477,006 + 12111 mRNA_3743 0.13 1.2
477,010 + 12111 mRNA_3743 0.13 -0.6
477,031 + 12111 mRNA_3743 0.14 -0.9