Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3733

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3732: 12100 - K02541 MCM3 DNA replication licensing factor MCM3, at 453754 to 456999 12100 mRNA_3733: 12101 - BLAST Hybrid signal transduction histidine kinase B [Leucoa..., at 457405 to 460471 12101 mRNA_3734: 12102 - Interpro Protein HRI1, at 460954 to 461748 12102

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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457,115 + 2.0
457,142 - -0.4
457,155 + -1.5
457,158 - 0.7
457,170 + -0.1
457,174 - -1.2
457,175 + 0.6
457,175 - -0.2
457,178 - 1.5
457,307 - -0.4
457,330 - 1.1
457,782 + 12101 mRNA_3733 0.12 1.4
458,511 - 12101 mRNA_3733 0.36 -0.8
458,545 - 12101 mRNA_3733 0.37 0.5
459,539 - 12101 mRNA_3733 0.70 -4.4
459,540 + 12101 mRNA_3733 0.70 -0.1
459,839 - 12101 mRNA_3733 0.79 1.3
460,006 - 12101 mRNA_3733 0.85 0.4
460,010 - 12101 mRNA_3733 0.85 1.2
460,047 - 12101 mRNA_3733 0.86 -0.4
460,141 + 12101 mRNA_3733 0.89 -0.4
460,142 - 12101 mRNA_3733 0.89 0.6
460,150 + 12101 mRNA_3733 0.90 -0.1
460,152 - 12101 mRNA_3733 0.90 -1.2
460,158 - 12101 mRNA_3733 0.90 -0.2
460,163 - 12101 mRNA_3733 0.90 -0.9
460,170 + 1.1
460,171 - -1.0
460,175 - 0.7
460,190 + 0.6
460,198 + 1.6
460,320 - -0.1
460,321 - 0.3
460,326 - -1.2
460,331 + -0.5
460,342 + 0.0
460,348 - 0.3
460,352 + -1.6
460,373 - 1.0
460,474 - 0.2
460,514 - -1.1
460,518 - 1.4
460,519 + 0.6
460,525 + -1.2
460,532 + -0.2
460,542 - 0.4
460,544 + 1.0
460,556 + 0.7
460,562 - -0.6
460,564 - 0.4
460,569 + 0.5
460,599 + -0.9
460,606 - -0.2
460,611 - -0.1
460,612 - 0.1
460,618 + 2.2
460,631 - -0.3
460,631 + -1.8
460,636 + 1.4
460,636 - 1.0
460,643 - 2.0
460,648 - 0.3
460,652 - -0.4
460,661 - -2.2
460,675 + 0.5
460,681 + -0.3
460,824 + 0.1
460,901 - 0.0
461,224 - 12102 mRNA_3734 0.34 1.1
461,243 - 12102 mRNA_3734 0.36 0.5