Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3703

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390554 to 394764 12070 mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394995 to 398800 12071 mRNA_3704: 12072 - Hypothetical Protein, at 399058 to 399573 12072 mRNA_3705: 12073 - Hypothetical Protein, at 399729 to 400196 12073

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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394,726 - -0.1
394,735 + 1.1
394,735 - -1.6
394,750 - -1.0
394,874 + -0.4
394,877 - 0.1
394,879 + -0.1
394,881 + -1.9
394,886 + -1.0
394,903 - 2.8
394,906 - -1.1
394,915 - 0.2
394,919 - 0.3
394,926 + -0.4
394,942 - -0.1
394,963 - 1.4
395,040 + 2.9
395,048 + -0.2
395,061 + -0.5
395,084 + -0.4
395,087 - 0.3
395,196 - -0.4
395,201 + -0.3
395,208 - -3.1
395,353 - 0.3
395,542 + 12071 mRNA_3703 0.14 -1.6
395,660 - 12071 mRNA_3703 0.17 0.1
395,665 - 12071 mRNA_3703 0.18 -0.8
396,364 + 12071 mRNA_3703 0.36 -0.6
396,387 - 12071 mRNA_3703 0.37 0.7
396,505 - 12071 mRNA_3703 0.40 -0.5
396,541 - 12071 mRNA_3703 0.41 0.2
396,606 - 12071 mRNA_3703 0.42 1.5
396,698 + 12071 mRNA_3703 0.45 1.0
396,947 - 12071 mRNA_3703 0.51 -1.1
397,081 - 12071 mRNA_3703 0.55 0.1
397,113 + 12071 mRNA_3703 0.56 -1.4
397,393 + 12071 mRNA_3703 0.63 0.1
397,517 - 12071 mRNA_3703 0.66 -0.2
397,542 + 12071 mRNA_3703 0.67 -0.2
397,803 + 12071 mRNA_3703 0.74 -0.1
397,838 + 12071 mRNA_3703 0.75 0.8
397,932 - 12071 mRNA_3703 0.77 -2.2
397,953 + 12071 mRNA_3703 0.78 -0.4
398,093 - 12071 mRNA_3703 0.81 0.2
398,384 + 12071 mRNA_3703 0.89 1.0
398,422 + 1.3
398,537 - -0.6
398,559 + -1.0
398,963 - -0.5
398,963 + 0.2
399,549 - 0.5
399,572 + 0.4
399,691 - -0.6
399,702 + 1.6
399,715 + -0.6