Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3674

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3673: 12041 - K11251 H2A histone H2A, at 313222 to 314004 12041 mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314540 to 316836 12042 mRNA_3675: 12043 - K11251 H2A histone H2A, at 317314 to 317987 12043

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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313,638 + 12041 mRNA_3673 0.53 -1.0
313,642 - 12041 mRNA_3673 0.54 -0.6
313,906 - 12041 mRNA_3673 0.87 0.3
313,919 + 12041 mRNA_3673 0.89 1.1
314,075 + -0.2
314,202 - -1.4
314,206 + -0.5
314,210 + 2.0
314,228 - 1.2
314,229 + -2.2
314,234 + -0.7
314,235 - -0.8
314,271 - -0.7
314,272 + 0.9
314,278 + 0.8
314,278 + 0.6
314,278 - 0.3
314,279 + 0.2
314,282 - 1.6
314,283 + 0.8
314,285 + 1.8
314,288 - 1.1
314,289 + -0.8
314,297 - 0.8
314,311 - -0.3
314,311 - -0.2
314,312 + -2.1
314,344 + 0.2
314,345 + 0.2
314,351 - 0.5
314,351 - 0.3
314,359 + 1.9
314,376 + 1.8
314,377 + 1.7
314,400 + -0.2
314,465 + 0.9
314,515 + 1.0
314,518 + -1.5
314,522 + -0.5
314,533 - -0.7
314,546 + 0.9
314,675 - 0.1
314,676 + -0.3
314,825 + 12042 mRNA_3674 0.12 -1.6
314,925 + 12042 mRNA_3674 0.17 0.2
314,966 + 12042 mRNA_3674 0.19 -0.9
315,270 + 12042 mRNA_3674 0.32 0.6
315,536 + 12042 mRNA_3674 0.43 1.2
316,536 + 12042 mRNA_3674 0.87 -0.2
316,969 - -1.4
316,969 - -1.2
317,135 - 0.9
317,153 + -0.0
317,391 - 12043 mRNA_3675 0.11 -1.4
317,592 + 12043 mRNA_3675 0.41 0.4
317,597 + 12043 mRNA_3675 0.42 -0.5
317,611 + 12043 mRNA_3675 0.44 0.1