Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3660

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3659: 12027 - Hypothetical Protein, at 283501 to 284501 12027 mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285259 to 286189 12028 mRNA_3661: 12029 - Hypothetical Protein, at 286182 to 286643 12029 mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286767 to 288003 12030

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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284,481 - 1.0
284,664 + 1.7
285,222 - 0.6
285,346 - 0.7
285,366 + 12028 mRNA_3660 0.11 1.2
285,525 + 12028 mRNA_3660 0.29 0.5
285,534 + 12028 mRNA_3660 0.30 -1.5
285,805 + 12028 mRNA_3660 0.59 -1.1
286,475 - 12029 mRNA_3661 0.63 -0.1
286,530 + 12029 mRNA_3661 0.75 -3.5
286,532 - 12029 mRNA_3661 0.76 -0.2
286,536 + 12029 mRNA_3661 0.77 0.4
286,541 + 12029 mRNA_3661 0.78 0.1
286,545 - 12029 mRNA_3661 0.79 -0.6
286,560 + 12029 mRNA_3661 0.82 1.3
286,591 - 12029 mRNA_3661 0.89 1.0
286,706 - 2.3
286,720 + 0.1
286,721 - 0.3
286,767 + -0.4
286,858 + 0.4
286,879 - 0.3
286,890 - 0.1
286,891 + 12030 mRNA_3662 0.10 -0.8
286,922 - 12030 mRNA_3662 0.13 1.1
286,972 - 12030 mRNA_3662 0.17 0.1
286,982 + 12030 mRNA_3662 0.17 0.6
287,010 + 12030 mRNA_3662 0.20 0.1
287,063 - 12030 mRNA_3662 0.24 -0.3
287,063 + 12030 mRNA_3662 0.24 0.0
287,070 + 12030 mRNA_3662 0.24 0.4
287,079 - 12030 mRNA_3662 0.25 -0.4
287,085 - 12030 mRNA_3662 0.26 -1.1
287,092 + 12030 mRNA_3662 0.26 0.1
287,100 + 12030 mRNA_3662 0.27 1.2
287,107 - 12030 mRNA_3662 0.27 -0.4
287,108 + 12030 mRNA_3662 0.28 0.6