Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3659

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3658: 12026 - Hypothetical Protein, at 282241 to 283121 12026 mRNA_3659: 12027 - Hypothetical Protein, at 283501 to 284501 12027 mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285259 to 286189 12028

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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282,535 - 12026 mRNA_3658 0.33 0.5
282,550 + 12026 mRNA_3658 0.35 0.6
282,562 - 12026 mRNA_3658 0.36 1.0
282,571 - 12026 mRNA_3658 0.37 0.5
282,572 + 12026 mRNA_3658 0.38 0.2
282,581 - 12026 mRNA_3658 0.39 0.2
282,582 - 12026 mRNA_3658 0.39 0.9
282,587 - 12026 mRNA_3658 0.39 0.1
282,590 - 12026 mRNA_3658 0.40 0.6
282,593 - 12026 mRNA_3658 0.40 2.2
282,593 + 12026 mRNA_3658 0.40 -0.8
282,594 - 12026 mRNA_3658 0.40 0.3
282,596 + 12026 mRNA_3658 0.40 1.2
282,601 - 12026 mRNA_3658 0.41 -0.4
282,612 + 12026 mRNA_3658 0.42 0.5
282,640 + 12026 mRNA_3658 0.45 -0.8
282,647 - 12026 mRNA_3658 0.46 -0.3
282,690 - 12026 mRNA_3658 0.51 -1.8
282,746 - 12026 mRNA_3658 0.57 -0.9
282,760 - 12026 mRNA_3658 0.59 1.3
282,766 - 12026 mRNA_3658 0.60 0.2
282,770 + 12026 mRNA_3658 0.60 1.2
282,806 + 12026 mRNA_3658 0.64 0.3
282,812 + 12026 mRNA_3658 0.65 -0.1
282,873 - 12026 mRNA_3658 0.72 -0.9
282,900 + 12026 mRNA_3658 0.75 0.7
282,928 - 12026 mRNA_3658 0.78 -0.0
282,930 + 12026 mRNA_3658 0.78 -0.1
283,073 - 0.3
283,075 + -0.5
283,163 - -1.4
283,199 - 0.1
283,237 - 0.1
283,239 - -0.6
283,790 + 12027 mRNA_3659 0.29 0.9
284,244 - 12027 mRNA_3659 0.74 0.6
284,481 - 1.0
284,664 + 1.7
285,222 - 0.6
285,346 - 0.7
285,366 + 12028 mRNA_3660 0.11 1.2