Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3654

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3654: 12022 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 269358 to 271210 12022 mRNA_3655: 12023 - KOG1721 FOG Zn-finger, at 271428 to 272912 12023

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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268,770 + -2.2
268,811 - 0.2
268,817 - 0.6
268,818 - -0.1
268,821 - 0.1
268,912 - 0.2
268,984 + -0.8
268,989 + 1.5
269,009 + 0.4
269,032 - -1.3
269,089 - 0.4
269,138 - 1.0
269,151 - 1.5
269,174 + 3.2
269,189 - 2.8
269,228 - -0.1
269,232 + 0.3
269,256 - 0.9
269,312 + -0.3
269,330 - -3.9
269,339 - 0.1
269,343 + -0.2
269,353 + -0.5
269,354 - -0.2
269,355 + 0.7
269,357 + 0.3
269,358 + 1.2
269,358 + -0.0
269,375 + 1.3
269,377 + 0.7
269,397 + -0.5
269,397 - 1.5
269,464 - -1.2
269,477 - -0.5
269,479 - 0.3
269,479 - 0.4
269,481 - 0.3
269,482 - 0.9
269,502 + -1.5
269,518 - -0.7
269,641 + 12022 mRNA_3654 0.15 -0.5
269,650 - 12022 mRNA_3654 0.16 0.7
269,752 - 12022 mRNA_3654 0.21 -0.8
269,793 - 12022 mRNA_3654 0.23 1.0
269,899 - 12022 mRNA_3654 0.29 0.5
269,900 - 12022 mRNA_3654 0.29 -0.6
269,921 - 12022 mRNA_3654 0.30 -0.6
269,930 - 12022 mRNA_3654 0.31 1.2
269,934 - 12022 mRNA_3654 0.31 0.1
269,935 + 12022 mRNA_3654 0.31 2.4
269,935 + 12022 mRNA_3654 0.31 -0.0
269,941 - 12022 mRNA_3654 0.31 -0.6
269,950 - 12022 mRNA_3654 0.32 -0.7
269,974 - 12022 mRNA_3654 0.33 2.7
269,975 - 12022 mRNA_3654 0.33 0.5
269,976 + 12022 mRNA_3654 0.33 -0.9
269,976 + 12022 mRNA_3654 0.33 1.2
269,978 - 12022 mRNA_3654 0.33 -3.7
269,990 - 12022 mRNA_3654 0.34 -0.1
270,017 + 12022 mRNA_3654 0.36 0.9
270,019 + 12022 mRNA_3654 0.36 -1.8
270,027 - 12022 mRNA_3654 0.36 -0.5
270,028 + 12022 mRNA_3654 0.36 -1.3
270,053 + 12022 mRNA_3654 0.38 0.8
270,053 + 12022 mRNA_3654 0.38 -2.1
270,054 - 12022 mRNA_3654 0.38 -0.4
270,062 + 12022 mRNA_3654 0.38 0.8
270,090 + 12022 mRNA_3654 0.40 -0.6
270,192 - 12022 mRNA_3654 0.45 0.3
270,278 - 12022 mRNA_3654 0.50 2.0
270,314 + 12022 mRNA_3654 0.52 0.6
270,350 - 12022 mRNA_3654 0.54 -0.9
270,407 - 12022 mRNA_3654 0.57 -1.6
270,444 - 12022 mRNA_3654 0.59 -0.4
270,485 - 12022 mRNA_3654 0.61 -0.1
270,486 + 12022 mRNA_3654 0.61 -1.7
270,492 + 12022 mRNA_3654 0.61 1.6
270,497 - 12022 mRNA_3654 0.61 -1.4
270,523 - 12022 mRNA_3654 0.63 -0.8
270,626 - 12022 mRNA_3654 0.68 1.2
270,646 + 12022 mRNA_3654 0.70 0.3
270,650 + 12022 mRNA_3654 0.70 -1.0
270,655 + 12022 mRNA_3654 0.70 -1.2
270,811 + 12022 mRNA_3654 0.78 0.2
270,911 - 12022 mRNA_3654 0.84 0.3
270,934 - 12022 mRNA_3654 0.85 1.3
271,076 - 1.1
271,104 - 2.3
271,116 + 0.2
271,177 - -0.6
271,177 - 1.5
271,248 - -1.1
271,249 + 0.8
271,252 - 0.8
271,254 + -0.5
271,270 + -0.4
271,379 - 0.8
271,405 - -1.0
271,428 + -0.3
271,459 - 1.6
271,552 + -0.1
271,711 + 12023 mRNA_3655 0.19 0.0
271,836 - 12023 mRNA_3655 0.27 0.3
271,837 + 12023 mRNA_3655 0.28 1.0
272,009 - 12023 mRNA_3655 0.39 -0.9