Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3600

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3599: 11967 - K02134 ATPeF1D, ATP5D, ATP16 F-type H+-transporting ATPase subunit delta, at 138513 to 139861 11967 mRNA_3600: 11968 - HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748, at 140474 to 142309 11968 mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143237 to 148837 11969

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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140,086 + -0.5
140,121 - 2.8
140,123 + -1.4
140,144 + -1.9
140,254 - -0.3
140,255 + -0.1
140,259 + 0.1
140,262 + 2.2
140,263 - 0.5
140,265 + -1.3
140,265 - 0.3
140,266 + 0.1
140,274 + -0.8
140,276 + -0.0
140,709 - 11968 mRNA_3600 0.13 -0.7
140,878 - 11968 mRNA_3600 0.22 -3.2
141,154 + 11968 mRNA_3600 0.37 -1.5
141,172 + 11968 mRNA_3600 0.38 0.1
141,451 - 11968 mRNA_3600 0.53 -3.2
142,196 - -0.5
142,209 + -2.3
142,602 - -0.6
142,772 - -2.6
142,793 + -2.0
142,861 - -1.6
142,915 + -2.6
142,916 - -1.5
142,923 + 0.2
142,932 - -0.3
142,955 - 0.1
142,958 - -0.1
143,046 - 0.5
143,076 + 2.0
143,098 - -0.9
143,255 - -3.0