Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3595

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127609 to 129068 11962 mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129467 to 131137 11963 mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131256 to 132687 11964

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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128,548 - 11962 mRNA_3594 0.64 0.2
128,693 + 11962 mRNA_3594 0.74 0.5
129,007 + 0.2
129,304 - 1.2
129,856 - 11963 mRNA_3595 0.23 -1.6
130,317 - 11963 mRNA_3595 0.51 -0.5
130,326 + 11963 mRNA_3595 0.51 -0.9
130,453 - 11963 mRNA_3595 0.59 1.1
130,462 + 11963 mRNA_3595 0.60 -1.0
131,008 + 0.2
131,062 + -2.8
131,074 + -0.1
131,076 + -0.1
131,198 + 0.9
131,200 + -0.1
131,254 - 0.4
131,268 - -1.0
131,268 - 0.1
131,276 - 0.5
131,276 - -0.1
131,277 + -0.2
131,278 - -0.4
131,278 + 0.5
131,279 + 1.3
131,285 + -0.6
131,287 + 0.3
131,302 - -1.3
131,302 - 0.2
131,303 - -0.5
131,304 + 0.5
131,308 + -0.5
131,310 + 0.7
131,312 + 0.3
131,318 - 1.3
131,320 - 0.5
131,326 + 0.0
131,326 + -0.7
131,337 + 1.0
131,338 + -1.3
131,339 + -0.3
131,340 - 0.1
131,352 - 1.0
131,354 - -0.3
131,367 - -0.5
131,418 - 11964 mRNA_3596 0.11 -0.1
131,425 - 11964 mRNA_3596 0.12 1.6
131,449 - 11964 mRNA_3596 0.13 -1.2
131,467 - 11964 mRNA_3596 0.15 -1.2
131,492 + 11964 mRNA_3596 0.16 1.4
131,607 + 11964 mRNA_3596 0.25 -1.4
131,608 + 11964 mRNA_3596 0.25 0.9
131,654 + 11964 mRNA_3596 0.28 1.3
131,877 + 11964 mRNA_3596 0.43 -0.1
131,921 - 11964 mRNA_3596 0.46 0.1