Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3573

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3572: 11940 - K11314 TADA2A, ADA2 transcriptional adapter 2-alpha, at 79105 to 81061 11940 mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81058 to 83632 11941 mRNA_3574: 11942 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 84191 to 85564 11942

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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80,640 - 11940 mRNA_3572 0.78 0.5
80,686 + 11940 mRNA_3572 0.81 1.3
80,991 - 0.6
81,273 + 0.0
81,381 + 11941 mRNA_3573 0.13 -0.5
81,411 + 11941 mRNA_3573 0.14 -2.9
81,630 - 11941 mRNA_3573 0.22 1.3
81,637 + 11941 mRNA_3573 0.22 -1.1
81,702 - 11941 mRNA_3573 0.25 0.0
81,937 + 11941 mRNA_3573 0.34 -0.7
82,559 + 11941 mRNA_3573 0.58 0.2
83,155 + 11941 mRNA_3573 0.81 -0.2
83,693 - 0.2
83,736 + -0.2
83,855 - 0.4
83,855 - -0.7
83,872 + 1.4
84,027 + -1.0
84,149 - 0.0
84,311 - 1.9
84,340 - 11942 mRNA_3574 0.11 -0.1
84,591 + 11942 mRNA_3574 0.29 0.2
84,603 + 11942 mRNA_3574 0.30 -2.0