Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3565

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3564: 11932 - Hypothetical Protein, at 63584 to 64390 11932 mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64818 to 67834 11933 mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68325 to 69478 11934

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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63,826 + 11932 mRNA_3564 0.30 -1.2
63,842 - 11932 mRNA_3564 0.32 0.8
63,850 + 11932 mRNA_3564 0.33 0.8
63,914 - 11932 mRNA_3564 0.41 2.5
63,982 - 11932 mRNA_3564 0.49 0.2
63,992 - 11932 mRNA_3564 0.51 0.7
63,996 - 11932 mRNA_3564 0.51 0.3
63,998 + 11932 mRNA_3564 0.51 -1.8
64,015 + 11932 mRNA_3564 0.53 -0.6
64,058 + 11932 mRNA_3564 0.59 -2.2
64,095 + 11932 mRNA_3564 0.63 0.2
64,132 - 11932 mRNA_3564 0.68 0.9
64,239 - 11932 mRNA_3564 0.81 0.2
64,242 - 11932 mRNA_3564 0.82 1.3
64,252 + 11932 mRNA_3564 0.83 -0.1
64,267 + 11932 mRNA_3564 0.85 1.0
64,298 - 11932 mRNA_3564 0.88 -1.3
64,362 - 1.5
64,392 - 0.4
64,403 - -0.8
64,416 - 0.9
64,425 - 1.1
64,518 + -0.7
64,528 + 1.6
64,575 + -0.7
64,658 + -0.6
64,699 + -0.5
64,730 + 0.6
64,733 - -0.3
64,756 - -1.0
65,032 + -1.1
65,051 + 1.2
65,056 + -0.4
65,205 - 11933 mRNA_3565 0.13 1.5
65,389 - 11933 mRNA_3565 0.19 1.1
65,397 + 11933 mRNA_3565 0.19 0.7
65,444 - 11933 mRNA_3565 0.21 0.4
65,457 + 11933 mRNA_3565 0.21 -0.3
65,569 - 11933 mRNA_3565 0.25 0.1
65,586 - 11933 mRNA_3565 0.25 2.0
65,734 - 11933 mRNA_3565 0.30 0.8
66,001 - 11933 mRNA_3565 0.39 0.1
66,646 + 11933 mRNA_3565 0.61 -0.3
66,769 + 11933 mRNA_3565 0.65 -0.7
67,083 + 11933 mRNA_3565 0.75 -0.0
67,084 - 11933 mRNA_3565 0.75 0.6
67,192 - 11933 mRNA_3565 0.79 2.4
67,345 - 11933 mRNA_3565 0.84 -1.0
67,730 + -1.6
67,893 - 0.9
67,913 + 0.1
67,917 - -1.3
68,040 - -2.0
68,047 + 0.4
68,052 - 2.3
68,063 - -0.0
68,072 + 0.4
68,075 + -1.5
68,165 - -0.6
68,174 + 0.9
68,174 - -0.4
68,209 + 0.2
68,209 - -0.6
68,214 - -0.7
68,217 + 0.4
68,226 - 0.4
68,226 + -0.0
68,227 + 0.5
68,238 - -0.9
68,239 - -0.3
68,246 + 0.4
68,259 + 0.1
68,289 - 0.7
68,314 + -0.9
68,356 - 0.6
68,390 + -1.8
68,392 - 1.0
68,395 - 0.8
68,500 + 11934 mRNA_3566 0.15 -0.6
68,647 + 11934 mRNA_3566 0.28 0.6
68,665 + 11934 mRNA_3566 0.29 -0.1