Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3555

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3554: 11922 - KOG0254 Predicted transporter (major facilitator superfamily), at 36108 to 36965 11922 mRNA_3555: 11923 - Hypothetical Protein, at 37536 to 38312 11923 mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38444 to 40817 11924

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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36,656 + 11922 mRNA_3554 0.64 -0.6
36,808 + 11922 mRNA_3554 0.82 0.1
36,824 + 11922 mRNA_3554 0.83 1.2
36,913 + 0.0
37,189 - -1.2
37,505 + -1.8
37,550 - -0.5
37,558 - 0.7
37,568 - 0.6
37,569 + 1.0
37,571 + 0.5
37,609 + 1.3
37,610 - 1.0
37,630 - 11923 mRNA_3555 0.12 0.4
37,630 + 11923 mRNA_3555 0.12 -0.1
37,632 + 11923 mRNA_3555 0.12 -0.0
37,636 + 11923 mRNA_3555 0.13 1.5
37,646 + 11923 mRNA_3555 0.14 0.9
37,650 - 11923 mRNA_3555 0.15 -0.2
37,684 - 11923 mRNA_3555 0.19 1.3
37,746 + 11923 mRNA_3555 0.27 0.3
37,753 + 11923 mRNA_3555 0.28 -0.5
37,760 + 11923 mRNA_3555 0.29 1.6
37,763 + 11923 mRNA_3555 0.29 0.4
37,812 - 11923 mRNA_3555 0.36 -1.2
37,822 - 11923 mRNA_3555 0.37 0.7
37,833 + 11923 mRNA_3555 0.38 0.3
37,833 - 11923 mRNA_3555 0.38 1.2
37,835 + 11923 mRNA_3555 0.38 -1.2
37,844 - 11923 mRNA_3555 0.40 1.8
37,848 - 11923 mRNA_3555 0.40 -2.4
37,861 + 11923 mRNA_3555 0.42 -1.9
37,865 - 11923 mRNA_3555 0.42 -0.5
37,867 + 11923 mRNA_3555 0.43 0.2
37,870 + 11923 mRNA_3555 0.43 2.0
37,871 + 11923 mRNA_3555 0.43 1.1
37,877 + 11923 mRNA_3555 0.44 2.3
37,885 - 11923 mRNA_3555 0.45 -0.7
37,920 + 11923 mRNA_3555 0.49 0.4
37,920 + 11923 mRNA_3555 0.49 -0.5
37,924 + 11923 mRNA_3555 0.50 -0.7
37,931 + 11923 mRNA_3555 0.51 -0.2
37,979 + 11923 mRNA_3555 0.57 -0.8
37,984 + 11923 mRNA_3555 0.58 1.3
37,994 + 11923 mRNA_3555 0.59 -0.6
38,032 + 11923 mRNA_3555 0.64 -0.4
38,081 - 11923 mRNA_3555 0.70 -0.0
38,081 - 11923 mRNA_3555 0.70 3.3
38,084 - 11923 mRNA_3555 0.71 -0.3
38,086 + 11923 mRNA_3555 0.71 -0.1
38,090 + 11923 mRNA_3555 0.71 1.0
38,115 + 11923 mRNA_3555 0.75 -0.0
38,128 + 11923 mRNA_3555 0.76 0.6
38,163 - 11923 mRNA_3555 0.81 -0.9
38,183 + 11923 mRNA_3555 0.83 -0.1
38,193 + 11923 mRNA_3555 0.85 -0.3
38,234 + 11923 mRNA_3555 0.90 2.5
38,253 - -1.4
38,254 - -2.0
38,256 - -0.2
38,257 + 0.8
38,258 - -0.4
38,258 - 0.4
38,269 + -1.3
38,272 + 0.4
38,275 + -0.1
38,285 + -0.1
38,411 + -0.2
38,421 - -1.3
38,431 - -0.0
38,476 + -0.6
38,548 + -0.0
38,580 + -1.2
38,612 + -0.4
38,706 - 11924 mRNA_3556 0.11 -0.3
38,767 + 11924 mRNA_3556 0.14 -0.6
38,904 + 11924 mRNA_3556 0.19 0.2
39,199 - 11924 mRNA_3556 0.32 -1.3
39,206 + 11924 mRNA_3556 0.32 0.1