Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3549

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22720 to 24408 11916 mRNA_3549: 11917 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 24932 to 26343 11917 mRNA_3550: 11918 - Hypothetical Protein, at 26790 to 27797 11918

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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24,097 - 11916 mRNA_3548 0.82 0.5
24,671 + -0.0
24,714 - 1.4
25,093 + 11917 mRNA_3549 0.11 0.5
25,567 - 11917 mRNA_3549 0.45 0.5
25,884 - 11917 mRNA_3549 0.67 0.7
25,976 - 11917 mRNA_3549 0.74 1.6
26,114 - 11917 mRNA_3549 0.84 1.5
26,160 - 11917 mRNA_3549 0.87 0.4
26,308 - -1.3
26,468 + 1.6
26,603 - -0.0
26,610 - -1.3
26,709 + 0.1
26,733 - -0.3
26,751 - 1.8
26,877 + 0.6
26,885 - -0.1
26,891 - 11918 mRNA_3550 0.10 1.2
26,896 + 11918 mRNA_3550 0.11 0.3
26,902 - 11918 mRNA_3550 0.11 0.2
26,903 + 11918 mRNA_3550 0.11 0.9
26,903 + 11918 mRNA_3550 0.11 0.2
27,034 + 11918 mRNA_3550 0.24 -1.8
27,042 + 11918 mRNA_3550 0.25 0.5
27,332 + 11918 mRNA_3550 0.54 1.3