Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3546

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3545: 11913 - HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906, at 16929 to 18162 11913 mRNA_3546: 11914 - HMMPfam-Domain of unknown function (DUF3844)-PF12955, at 18733 to 20553 11914 mRNA_3547: 11915 - K02973 RP-S23e, RPS23 small subunit ribosomal protein S23e, at 21031 to 22475 11915

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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17,941 - 11913 mRNA_3545 0.82 -0.5
17,947 + 11913 mRNA_3545 0.82 0.0
17,955 + 11913 mRNA_3545 0.83 -0.1
18,223 - 0.4
18,370 + 1.2
18,380 - 0.7
18,523 - -2.4
18,528 - 0.1
18,536 - 0.3
18,537 + -0.2
18,545 + -0.5
18,551 + 0.5
18,555 - -0.9
18,566 + -0.7
18,677 + 1.4
18,688 - -0.4
18,697 + -0.9
18,706 - -0.2
18,730 + 0.1
18,819 + -0.9
18,838 - 0.2
18,870 + -0.1
18,971 - 11914 mRNA_3546 0.13 0.2
18,983 - 11914 mRNA_3546 0.14 1.2
19,025 + 11914 mRNA_3546 0.16 1.0
19,141 + 11914 mRNA_3546 0.22 -0.2
19,295 + 11914 mRNA_3546 0.31 -1.3
19,296 + 11914 mRNA_3546 0.31 0.7
19,419 + 11914 mRNA_3546 0.38 2.9
19,452 + 11914 mRNA_3546 0.39 -1.8
19,560 - 11914 mRNA_3546 0.45 0.8
19,565 - 11914 mRNA_3546 0.46 -0.1
20,073 + 11914 mRNA_3546 0.74 0.5
20,114 - 11914 mRNA_3546 0.76 -0.6
20,151 + 11914 mRNA_3546 0.78 1.2
20,423 + 1.7
20,595 + -1.1