Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3519

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3518: 11886 - K12275 SEC62 translocation protein SEC62, at 295819 to 296849 11886 mRNA_3519: 11887 - KOG4686 Predicted sugar transporter, at 297438 to 299524 11887 mRNA_3520: 11888 - BLAST mannose-6-phosphate isomerase, class I [Kwoniella..., at 299800 to 300733 11888

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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296,896 + -0.6
296,898 - -0.2
296,903 + 0.5
296,912 + 0.9
297,076 - -0.2
297,103 - -0.3
297,104 + -0.6
297,138 + -0.9
297,156 - 0.9
297,167 - 2.1
297,181 + -1.1
297,193 - 0.2
297,211 + -1.0
297,211 + 0.3
297,214 - 0.8
297,230 - -0.6
297,281 - 1.5
297,288 - -0.3
297,305 + 1.0
297,312 + -0.8
297,356 - 0.9
297,417 - 2.0
297,477 + -0.8
297,510 - 0.7
297,811 + 11887 mRNA_3519 0.18 -0.9
298,086 + 11887 mRNA_3519 0.31 -0.2
298,087 - 11887 mRNA_3519 0.31 0.4
299,309 - 11887 mRNA_3519 0.90 0.5
299,415 - -0.2