Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3509

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262160 to 263731 11876 mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263913 to 265913 11877 mRNA_3510: 11878 - K00889 PIP5K 1-phosphatidylinositol-4-phosphate 5-kinase, at 266286 to 268239 11878

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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263,057 - 11876 mRNA_3508 0.57 2.4
263,204 - 11876 mRNA_3508 0.66 0.3
263,539 + 11876 mRNA_3508 0.88 0.5
263,561 + 11876 mRNA_3508 0.89 -0.3
263,674 + -0.0
263,703 + 0.3
263,885 - 0.9
263,944 - -0.4
263,975 - -0.6
264,072 - -1.2
264,328 + 11877 mRNA_3509 0.21 0.4
264,688 + 11877 mRNA_3509 0.39 0.3
264,753 - 11877 mRNA_3509 0.42 0.6
264,858 + 11877 mRNA_3509 0.47 0.4
264,871 + 11877 mRNA_3509 0.48 0.1
264,986 + 11877 mRNA_3509 0.54 -0.1
265,295 + 11877 mRNA_3509 0.69 1.4
265,759 - 0.2
265,765 + 2.4
266,058 + 0.7
266,126 - -3.4
266,231 - 1.1