Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3506

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257806 to 259201 11873 mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259634 to 260419 11874 mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260634 to 261961 11875

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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259,139 - -0.1
259,274 - -0.7
259,288 + -0.2
259,288 + -0.1
259,307 + -0.4
259,314 - 1.3
259,315 + 0.4
259,414 + -0.7
259,437 - 1.1
259,594 + 0.9
259,893 - 11874 mRNA_3506 0.33 0.0
260,009 + 11874 mRNA_3506 0.48 -0.7
260,042 - 11874 mRNA_3506 0.52 -0.2
260,062 + 11874 mRNA_3506 0.54 1.3
260,487 + 0.3
260,492 - 1.2
260,500 - 0.9
260,911 - 11875 mRNA_3507 0.21 -0.4
260,923 - 11875 mRNA_3507 0.22 0.0
261,047 + 11875 mRNA_3507 0.31 1.6
261,060 + 11875 mRNA_3507 0.32 -0.8
261,223 + 11875 mRNA_3507 0.44 -0.4