Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3505

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255381 to 257476 11872 mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257806 to 259201 11873 mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259634 to 260419 11874

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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256,969 - 11872 mRNA_3504 0.76 0.3
257,081 + 11872 mRNA_3504 0.81 -2.4
257,109 + 11872 mRNA_3504 0.82 1.8
257,126 + 11872 mRNA_3504 0.83 -0.9
257,387 - -0.3
257,395 + -0.7
257,407 + 0.9
257,548 + 0.1
257,553 - 1.7
257,555 + 0.3
257,577 - 0.4
257,579 + 0.8
257,699 - -1.8
258,002 - 11873 mRNA_3505 0.14 1.0
258,168 - 11873 mRNA_3505 0.26 0.0
258,199 - 11873 mRNA_3505 0.28 1.2
258,295 - 11873 mRNA_3505 0.35 0.7
259,139 - -0.1
259,274 - -0.7
259,288 + -0.2
259,288 + -0.1
259,307 + -0.4
259,314 - 1.3
259,315 + 0.4
259,414 + -0.7
259,437 - 1.1
259,594 + 0.9
259,893 - 11874 mRNA_3506 0.33 0.0
260,009 + 11874 mRNA_3506 0.48 -0.7
260,042 - 11874 mRNA_3506 0.52 -0.2
260,062 + 11874 mRNA_3506 0.54 1.3