Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3500

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3499: 11867 - K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase, at 243095 to 244996 11867 mRNA_3500: 11868 - KOG2519 5'-3' exonuclease, at 245700 to 248074 11868 mRNA_3501: 11869 - KOG3791 Predicted RNA-binding protein involved in translational regulation, at 248480 to 250835 11869

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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245,132 - 0.0
245,138 - 0.5
245,138 - -1.3
245,220 - -1.0
245,228 + -0.6
245,235 - 0.1
245,241 + 0.2
245,248 - -0.2
245,258 + 1.4
247,785 + 11868 mRNA_3500 0.88 0.2
247,880 - 1.8
248,273 - -1.2
248,491 - 0.5
248,520 - -0.1
248,614 - 0.1
248,710 - -0.1
248,923 - 11869 mRNA_3501 0.19 2.0