Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3497

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3496: 11864 - KOG1198 Zinc-binding oxidoreductase, at 239425 to 240814 11864 mRNA_3497: 11865 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 241064 to 241942 11865 mRNA_3498: 11866 - K18064 ACR2 arsenical-resistance protein 2, at 242240 to 242927 11866

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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240,235 + 11864 mRNA_3496 0.58 -0.1
240,425 - 11864 mRNA_3496 0.72 1.4
240,526 - 11864 mRNA_3496 0.79 1.0
240,714 + -1.7
240,815 + 2.1
240,824 - -0.1
240,826 - -0.4
240,836 + -1.1
240,844 - 1.0
240,954 - 0.0
240,971 - -0.3
240,985 + -0.4
240,988 + -0.3
240,998 - 2.0
241,007 + 1.0
241,150 + 0.3
241,253 + 11865 mRNA_3497 0.22 0.5
241,257 - 11865 mRNA_3497 0.22 -0.3
241,281 - 11865 mRNA_3497 0.25 -1.8
241,299 - 11865 mRNA_3497 0.27 -0.9
241,435 - 11865 mRNA_3497 0.42 1.0
241,566 - 11865 mRNA_3497 0.57 1.7
241,583 + 11865 mRNA_3497 0.59 -2.8
241,686 - 11865 mRNA_3497 0.71 -0.4
241,724 - 11865 mRNA_3497 0.75 -0.2
241,859 + 0.5
241,877 + 1.9
241,993 - 0.6
242,010 + 1.0
242,142 + 0.9
242,290 + -0.0
242,428 - 11866 mRNA_3498 0.27 -0.7
242,707 - 11866 mRNA_3498 0.68 0.2
242,875 + 1.2