Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3473

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3472: 11840 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 185364 to 186603 11840 mRNA_3473: 11841 - K11578 ZW10, DSL1 protein transport protein DSL1/ZW10, at 186960 to 196280 11841 mRNA_3474: 11842 - HMMPfam-Protein of unknown function (DUF667)-PF05018, at 196637 to 197393 11842

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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186,432 - 11840 mRNA_3472 0.86 -0.1
186,527 - -0.7
186,561 - -1.1
186,571 + 0.6
186,575 - 0.6
186,578 + 0.6
186,581 - 0.8
186,587 + -0.3
186,710 + 1.8
186,735 - 0.9
189,015 - 11841 mRNA_3473 0.22 1.7
189,065 - 11841 mRNA_3473 0.23 1.5
189,115 + 11841 mRNA_3473 0.23 -0.1
189,271 + 11841 mRNA_3473 0.25 1.5
189,479 + 11841 mRNA_3473 0.27 0.4
189,742 - 11841 mRNA_3473 0.30 1.9
189,742 + 11841 mRNA_3473 0.30 2.1
189,827 + 11841 mRNA_3473 0.31 -0.4
189,866 - 11841 mRNA_3473 0.31 0.7
189,964 + 11841 mRNA_3473 0.32 1.6
190,016 - 11841 mRNA_3473 0.33 0.9
190,175 - 11841 mRNA_3473 0.34 1.3
190,424 - 11841 mRNA_3473 0.37 -0.0
190,435 - 11841 mRNA_3473 0.37 1.9
190,728 - 11841 mRNA_3473 0.40 2.5
190,746 - 11841 mRNA_3473 0.41 1.0
191,916 - 11841 mRNA_3473 0.53 -1.7
193,762 - 11841 mRNA_3473 0.73 1.4
195,503 - -0.4
195,884 - -0.3
196,137 - 0.6
196,271 + -0.1
196,455 + 0.5
196,991 - 11842 mRNA_3474 0.47 0.2
197,204 + 11842 mRNA_3474 0.75 -0.8