Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3469

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3468: 11836 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 175378 to 177362 11836 mRNA_3469: 11837 - K07512 MECR, NRBF1 mitochondrial trans-2-enoyl-CoA reductase, at 177477 to 179110 11837 mRNA_3470: 11838 - KOG1492 C3H1-type Zn-finger protein, at 179330 to 181535 11838

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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176,525 + 11836 mRNA_3468 0.58 0.9
176,533 - 11836 mRNA_3468 0.58 0.1
176,541 + 11836 mRNA_3468 0.59 0.8
176,592 - 11836 mRNA_3468 0.61 0.6
176,629 + 11836 mRNA_3468 0.63 0.9
177,041 - 11836 mRNA_3468 0.84 -0.9
177,292 - -0.3
177,436 - 0.5
177,447 + 0.1
177,483 + -0.0
177,494 - -0.7
177,585 - -0.2
177,590 - 1.0
177,653 + 11837 mRNA_3469 0.11 0.2
177,809 - 11837 mRNA_3469 0.20 0.8
177,908 + 11837 mRNA_3469 0.26 -1.1
177,910 - 11837 mRNA_3469 0.26 -0.1
178,026 - 11837 mRNA_3469 0.34 -0.0
178,115 + 11837 mRNA_3469 0.39 -1.2
178,347 - 11837 mRNA_3469 0.53 0.8
178,533 - 11837 mRNA_3469 0.65 1.3
178,533 + 11837 mRNA_3469 0.65 0.2
178,545 + 11837 mRNA_3469 0.65 0.8
178,794 + 11837 mRNA_3469 0.81 0.2
179,240 + 0.3
179,362 + -0.8
179,366 - -0.3
179,389 + -0.4
179,390 - 2.8
179,519 - -0.3
179,554 + 11838 mRNA_3470 0.10 -1.3