Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3460

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147794 to 151467 11827 mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151624 to 153827 11828 mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154218 to 156143 11829

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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150,641 - 11827 mRNA_3459 0.77 1.5
150,671 - 11827 mRNA_3459 0.78 -1.2
150,794 - 11827 mRNA_3459 0.82 -0.9
150,834 - 11827 mRNA_3459 0.83 0.0
150,913 - 11827 mRNA_3459 0.85 -0.4
150,916 + 11827 mRNA_3459 0.85 -0.2
150,943 + 11827 mRNA_3459 0.86 1.1
151,047 + 11827 mRNA_3459 0.89 0.1
151,093 - 11827 mRNA_3459 0.90 1.0
151,172 + -0.6
151,281 - 0.9
151,391 - 1.3
151,395 - -1.5
151,397 - -5.2
151,403 - 0.1
151,411 - 0.9
151,434 + 0.3
151,520 + -0.4
151,525 + 1.5
151,529 + 1.0
151,559 + -0.3
151,564 + 0.1
151,568 + 0.2
151,570 + 0.6
151,574 + 0.1
151,710 + 0.9
151,714 - -0.9
151,866 + 11828 mRNA_3460 0.11 -1.2
152,018 - 11828 mRNA_3460 0.18 0.2
152,362 - 11828 mRNA_3460 0.33 0.1
152,510 + 11828 mRNA_3460 0.40 1.4
152,866 - 11828 mRNA_3460 0.56 1.7
153,141 - 11828 mRNA_3460 0.69 0.4
153,141 - 11828 mRNA_3460 0.69 -2.6
153,147 + 11828 mRNA_3460 0.69 -2.2
153,204 - 11828 mRNA_3460 0.72 -0.2
153,331 - 11828 mRNA_3460 0.77 0.6
153,332 + 11828 mRNA_3460 0.77 -0.8
153,334 + 11828 mRNA_3460 0.78 0.1
153,344 - 11828 mRNA_3460 0.78 -0.4
153,345 - 11828 mRNA_3460 0.78 -0.5
153,477 + 11828 mRNA_3460 0.84 0.6
153,517 + 11828 mRNA_3460 0.86 0.9
153,525 + 11828 mRNA_3460 0.86 0.3
153,646 + 0.3
153,753 - -0.3
153,775 - -2.5
153,793 - -1.4
153,801 - 0.5
153,808 - -0.6
153,909 - 0.1
153,916 + 0.1
153,939 - -0.3
154,078 + -0.7
154,215 + -0.6
154,351 - -1.3
154,369 - 0.1
154,376 + -1.3