Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3459

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3458: 11826 - K03857 PIGA, GPI3 phosphatidylinositol glycan, class A, at 145752 to 147635 11826 mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147794 to 151467 11827 mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151624 to 153827 11828

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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147,702 + 0.7
148,004 - -1.8
148,011 + 2.0
148,011 + -0.1
148,011 + -1.5
148,129 - -0.2
148,418 - 11827 mRNA_3459 0.17 -1.7
148,468 - 11827 mRNA_3459 0.18 0.8
148,544 - 11827 mRNA_3459 0.20 0.2
148,610 - 11827 mRNA_3459 0.22 0.8
148,627 - 11827 mRNA_3459 0.23 -0.1
148,648 - 11827 mRNA_3459 0.23 0.2
148,742 + 11827 mRNA_3459 0.26 0.5
148,907 - 11827 mRNA_3459 0.30 -1.0
148,912 - 11827 mRNA_3459 0.30 0.7
149,020 + 11827 mRNA_3459 0.33 0.6
149,096 - 11827 mRNA_3459 0.35 2.1
149,147 - 11827 mRNA_3459 0.37 -0.4
149,188 + 11827 mRNA_3459 0.38 1.3
149,478 - 11827 mRNA_3459 0.46 0.1
149,638 + 11827 mRNA_3459 0.50 0.6
149,650 + 11827 mRNA_3459 0.51 -0.9
149,654 + 11827 mRNA_3459 0.51 -0.9
149,778 + 11827 mRNA_3459 0.54 0.4
149,881 - 11827 mRNA_3459 0.57 -1.3
149,908 - 11827 mRNA_3459 0.58 -1.2
149,915 + 11827 mRNA_3459 0.58 1.3
149,979 + 11827 mRNA_3459 0.59 -3.1
149,981 - 11827 mRNA_3459 0.60 -1.3
150,056 - 11827 mRNA_3459 0.62 -0.8
150,070 + 11827 mRNA_3459 0.62 -1.0
150,071 - 11827 mRNA_3459 0.62 -0.4
150,090 - 11827 mRNA_3459 0.62 -0.5
150,090 - 11827 mRNA_3459 0.62 0.6
150,215 - 11827 mRNA_3459 0.66 -2.5
150,217 + 11827 mRNA_3459 0.66 -1.0
150,221 - 11827 mRNA_3459 0.66 -0.4
150,294 + 11827 mRNA_3459 0.68 0.1
150,370 - 11827 mRNA_3459 0.70 0.2
150,476 - 11827 mRNA_3459 0.73 0.9
150,535 - 11827 mRNA_3459 0.75 -2.5
150,641 - 11827 mRNA_3459 0.77 1.5
150,671 - 11827 mRNA_3459 0.78 -1.2
150,794 - 11827 mRNA_3459 0.82 -0.9
150,834 - 11827 mRNA_3459 0.83 0.0
150,913 - 11827 mRNA_3459 0.85 -0.4
150,916 + 11827 mRNA_3459 0.85 -0.2
150,943 + 11827 mRNA_3459 0.86 1.1
151,047 + 11827 mRNA_3459 0.89 0.1
151,093 - 11827 mRNA_3459 0.90 1.0
151,172 + -0.6
151,281 - 0.9
151,391 - 1.3
151,395 - -1.5
151,397 - -5.2
151,403 - 0.1
151,411 - 0.9
151,434 + 0.3
151,520 + -0.4
151,525 + 1.5
151,529 + 1.0
151,559 + -0.3
151,564 + 0.1
151,568 + 0.2
151,570 + 0.6
151,574 + 0.1
151,710 + 0.9
151,714 - -0.9
151,866 + 11828 mRNA_3460 0.11 -1.2
152,018 - 11828 mRNA_3460 0.18 0.2
152,362 - 11828 mRNA_3460 0.33 0.1