Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3456

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141028 to 142309 11823 mRNA_3456: 11824 - HMMPfam-Family of unknown function (DUF500)-PF04366, at 142552 to 143804 11824 mRNA_3457: 11825 - KOG1843 Uncharacterized conserved protein, at 144074 to 145634 11825

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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141,822 + 11823 mRNA_3455 0.62 2.3
141,960 + 11823 mRNA_3455 0.73 0.5
142,134 + 11823 mRNA_3455 0.86 0.7
142,141 - 11823 mRNA_3455 0.87 0.0
142,163 - 11823 mRNA_3455 0.89 -0.7
142,198 + -0.1
142,396 + 0.2
142,397 - -0.1
142,399 - 0.6
142,405 - 0.2
142,409 - 0.7
142,410 - 0.1
142,414 - -1.1
142,419 + -0.7
142,435 - -2.3
142,436 + 1.6
142,560 - 0.7
142,590 - -0.8
142,593 + -0.4
142,603 + -0.3
143,014 - 11824 mRNA_3456 0.37 -0.6
143,028 + 11824 mRNA_3456 0.38 2.0
143,328 - 11824 mRNA_3456 0.62 -0.2
143,610 + 11824 mRNA_3456 0.84 -2.9
143,734 - -2.4
143,747 - 0.8
143,758 - 0.9
143,768 + -1.4
143,807 + 0.8
143,856 - -1.8
143,891 + -0.2
143,898 + -1.1
143,900 + -0.0
143,906 - 0.9
143,909 + 0.6
143,910 - 1.2
143,917 - -0.4
143,942 + -0.8
144,202 + -2.3
144,206 - 0.3
144,327 + 11825 mRNA_3457 0.16 -0.8
144,346 - 11825 mRNA_3457 0.17 0.1
144,351 + 11825 mRNA_3457 0.18 -0.3
144,504 - 11825 mRNA_3457 0.28 -0.4
144,594 + 11825 mRNA_3457 0.33 0.1