Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3454

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138350 to 139548 11821 mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139645 to 140934 11822 mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141028 to 142309 11823

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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138,763 - 11821 mRNA_3453 0.34 -1.5
139,314 + 11821 mRNA_3453 0.80 1.0
139,360 + 11821 mRNA_3453 0.84 0.9
139,470 - -0.2
139,508 + -0.4
139,743 + -0.9
139,775 - 11822 mRNA_3454 0.10 1.7
140,295 + 11822 mRNA_3454 0.50 1.4
140,352 + 11822 mRNA_3454 0.55 -0.0
140,366 - 11822 mRNA_3454 0.56 -0.3
140,397 + 11822 mRNA_3454 0.58 0.3
140,458 + 11822 mRNA_3454 0.63 0.5
140,461 - 11822 mRNA_3454 0.63 0.3
140,461 - 11822 mRNA_3454 0.63 -0.1
140,531 + 11822 mRNA_3454 0.69 -1.2
140,629 - 11822 mRNA_3454 0.76 0.3
140,645 - 11822 mRNA_3454 0.78 -0.0
140,811 - 0.3
140,996 - 2.8
141,158 - 11823 mRNA_3455 0.10 -1.7
141,232 + 11823 mRNA_3455 0.16 -0.3
141,251 + 11823 mRNA_3455 0.17 -0.2
141,822 + 11823 mRNA_3455 0.62 2.3