Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3436

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3435: 11803 - K12614 DDX6, RCK, DHH1 ATP-dependent RNA helicase DDX6/DHH1, at 91986 to 94017 11803 mRNA_3436: 11804 - HMMPfam-Oligosaccharyltransferase subunit Ribophorin II-PF05817, at 94407 to 97285 11804 mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97433 to 99630 11805

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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93,718 - 11803 mRNA_3435 0.85 -0.7
93,863 + 0.1
94,022 + -0.4
94,207 - 0.0
94,477 - 1.2
94,553 + 1.3
94,683 + 0.1
95,332 + 11804 mRNA_3436 0.32 -2.4
95,465 - 11804 mRNA_3436 0.37 0.2
95,465 - 11804 mRNA_3436 0.37 -0.9
95,618 + 11804 mRNA_3436 0.42 -0.5
95,727 + 11804 mRNA_3436 0.46 -1.9
95,904 - 11804 mRNA_3436 0.52 0.3
95,911 + 11804 mRNA_3436 0.52 0.1
95,911 + 11804 mRNA_3436 0.52 0.2
95,968 - 11804 mRNA_3436 0.54 0.9
96,024 + 11804 mRNA_3436 0.56 -1.7
96,163 - 11804 mRNA_3436 0.61 -0.5
96,172 + 11804 mRNA_3436 0.61 -0.7
96,495 - 11804 mRNA_3436 0.73 0.2
96,623 - 11804 mRNA_3436 0.77 0.3
96,894 - 11804 mRNA_3436 0.86 0.1
96,915 - 11804 mRNA_3436 0.87 0.3
96,930 + 11804 mRNA_3436 0.88 0.4
97,002 - 2.1
97,080 - -0.0
97,204 + 0.3
97,358 + -0.2
97,388 + -0.8
97,412 - 0.2