Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3428

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3427: 11795 - HMMPfam-Domain of unknown function (DUF1996)-PF09362, at 70674 to 72222 11795 mRNA_3428: 11796 - Hypothetical Protein, at 72925 to 76768 11796 mRNA_3429: 11797 - K06636 SMC1 structural maintenance of chromosome 1, at 77448 to 78675 11797

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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72,322 + 1.1
72,858 - 0.3
72,887 + 1.9
73,047 - -0.2
73,075 + 0.7
73,160 + 0.5
73,874 - 11796 mRNA_3428 0.25 -0.3
73,900 + 11796 mRNA_3428 0.25 -0.2
74,254 + 11796 mRNA_3428 0.35 -0.2
74,481 + 11796 mRNA_3428 0.40 0.3
74,982 - 11796 mRNA_3428 0.54 0.4
75,811 - 11796 mRNA_3428 0.75 -1.5
76,393 + -0.4
76,505 - -0.7
76,514 - -0.2
76,527 - 0.5
76,667 + 0.7
76,701 + -0.5
76,712 + -1.3
76,788 - -0.6
76,822 + 2.8
76,837 - 0.1
76,838 - -0.3
76,857 - -0.2
76,858 + 0.4
76,969 + -0.2
76,980 + 0.5
77,005 + 0.0
77,008 - -0.5
77,009 + -0.4
77,018 - 1.0
77,045 + 0.4
77,047 - -0.9
77,085 + -0.9
77,105 + -0.0
77,233 - 0.3
77,238 + 0.0
77,244 + -1.4
77,247 + -1.0
77,292 - 0.6
77,404 - -0.0
77,414 - 2.0
77,434 + 0.5
77,438 + 0.7