Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3407

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3406: 11774 - Hypothetical Protein, at 12464 to 13384 11774 mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13609 to 17494 11775 mRNA_3408: 11776 - K00012 UGDH, ugd UDPglucose 6-dehydrogenase, at 18200 to 20454 11776

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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12,648 + 11774 mRNA_3406 0.20 2.1
12,661 + 11774 mRNA_3406 0.21 -1.1
12,772 - 11774 mRNA_3406 0.33 1.4
12,778 + 11774 mRNA_3406 0.34 -0.2
12,779 - 11774 mRNA_3406 0.34 -0.1
12,799 + 11774 mRNA_3406 0.36 -1.7
12,803 - 11774 mRNA_3406 0.37 0.2
12,805 - 11774 mRNA_3406 0.37 0.9
12,817 - 11774 mRNA_3406 0.38 0.4
12,821 + 11774 mRNA_3406 0.39 0.1
12,821 - 11774 mRNA_3406 0.39 1.6
12,827 + 11774 mRNA_3406 0.39 0.4
12,936 - 11774 mRNA_3406 0.51 -0.2
12,936 - 11774 mRNA_3406 0.51 0.2
12,949 + 11774 mRNA_3406 0.53 -1.8
12,957 + 11774 mRNA_3406 0.54 -2.0
12,964 - 11774 mRNA_3406 0.54 0.8
12,964 + 11774 mRNA_3406 0.54 -0.3
12,971 - 11774 mRNA_3406 0.55 0.3
12,973 - 11774 mRNA_3406 0.55 0.3
12,976 - 11774 mRNA_3406 0.56 -0.4
13,100 - 11774 mRNA_3406 0.69 -1.9
13,114 - 11774 mRNA_3406 0.71 -0.8
13,119 - 11774 mRNA_3406 0.71 -0.7
13,122 - 11774 mRNA_3406 0.71 1.3
13,130 + 11774 mRNA_3406 0.72 0.6
13,136 - 11774 mRNA_3406 0.73 -1.2
13,225 - 11774 mRNA_3406 0.83 -3.1
13,242 - 11774 mRNA_3406 0.84 2.2
13,273 + 11774 mRNA_3406 0.88 -0.2
13,286 - 11774 mRNA_3406 0.89 -1.1
13,300 + -1.1
13,318 - -1.0
13,343 + -1.3
13,348 - -3.0
13,348 - -0.9
13,381 - -1.9
13,386 + 0.2
13,389 - -2.4
13,399 - -1.2
13,401 - -0.5
13,415 - -0.2
13,415 + -0.2
13,418 + -1.0
13,427 + 0.2
13,445 - -1.5
13,455 - -0.3
13,466 - -0.7
13,536 - -0.6
13,583 - 1.7
13,750 + -0.6
14,003 - 11775 mRNA_3407 0.10 -1.1
14,040 - 11775 mRNA_3407 0.11 -0.6
14,396 - 11775 mRNA_3407 0.20 0.2
14,398 - 11775 mRNA_3407 0.20 -2.4
14,431 + 11775 mRNA_3407 0.21 -1.7
14,454 - 11775 mRNA_3407 0.22 -1.3
14,642 - 11775 mRNA_3407 0.27 -1.2
14,877 - 11775 mRNA_3407 0.33 -0.1
15,021 - 11775 mRNA_3407 0.36 -0.4
15,311 - 11775 mRNA_3407 0.44 -0.9
15,728 - 11775 mRNA_3407 0.55 -0.9
15,743 + 11775 mRNA_3407 0.55 -1.3
15,913 - 11775 mRNA_3407 0.59 -1.1
15,923 - 11775 mRNA_3407 0.60 -0.0
16,447 - 11775 mRNA_3407 0.73 -2.7
17,077 + 11775 mRNA_3407 0.89 -1.5
17,661 - 0.6
17,687 + 0.7
17,824 + 1.3
17,911 - 0.1
17,919 - 0.4
17,920 - -0.7
17,937 + -1.2
17,938 - -1.1
17,964 - 0.2
17,987 - 0.6
18,054 - 2.4
18,069 + -2.1
18,097 - 0.9
18,099 + 1.2
18,109 - 1.4
18,119 - 0.8
18,121 - 2.9
18,123 - 2.5
18,126 + -0.4
18,127 - 1.8
18,128 + -0.9
18,131 - 0.0
18,267 - 6.4
18,271 - 4.9
18,398 + 3.3