Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3400

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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584,873 - 11767 mRNA_3399 0.75 0.5
584,957 - 11767 mRNA_3399 0.78 1.0
585,004 - 11767 mRNA_3399 0.79 1.7
585,100 + 11767 mRNA_3399 0.82 -2.0
585,100 - 11767 mRNA_3399 0.82 -1.8
585,220 + 11767 mRNA_3399 0.85 -0.7
585,303 - 11767 mRNA_3399 0.88 0.4
585,320 + 11767 mRNA_3399 0.88 -1.4
585,362 + 11767 mRNA_3399 0.90 -1.0
585,451 + -0.8
585,474 - -1.1
585,514 - -0.5
585,613 - 0.3
585,629 + 0.3
585,638 + 0.9
585,670 + 1.0
585,767 + -0.5
585,777 - 0.2
585,792 - -0.1
585,803 + -0.5
586,039 - 11768 mRNA_3400 0.12 -0.8
587,250 - 11768 mRNA_3400 0.84 -1.5
587,294 + 11768 mRNA_3400 0.86 0.9
587,300 - 11768 mRNA_3400 0.87 0.3
587,357 - 1.4
587,397 - 0.2
587,412 + -0.8
587,414 + 2.0
587,414 + -0.8
587,419 + 0.3
587,461 - -0.4
587,466 - -0.6
587,473 - -1.4
587,490 - 1.3
587,535 + 0.8
587,535 - 0.7
587,535 + -0.5
587,551 - 0.3
587,551 + -0.2
587,562 + -2.7
587,564 - 1.4
587,564 - -0.0
587,565 - 1.0
587,569 - -0.4
587,570 + -0.7
587,574 - -0.1
587,581 - -0.3
587,581 - 0.5
587,583 - -0.8
587,593 - -0.5
587,595 - -2.3
587,595 - -0.2
587,600 - 1.5