Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3399

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3398: 11766 - Hypothetical Protein, at 580854 to 581831 11766 mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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581,312 + 11766 mRNA_3398 0.47 -0.1
581,400 + 11766 mRNA_3398 0.56 1.2
581,407 + 11766 mRNA_3398 0.57 0.3
581,422 + 11766 mRNA_3398 0.58 1.5
581,435 - 11766 mRNA_3398 0.59 -0.6
581,524 + 11766 mRNA_3398 0.69 0.4
581,554 - 11766 mRNA_3398 0.72 0.7
581,570 + 11766 mRNA_3398 0.73 2.0
581,721 + 11766 mRNA_3398 0.89 1.4
581,729 + 11766 mRNA_3398 0.89 2.1
581,730 + 11766 mRNA_3398 0.90 1.5
581,851 - 0.0
581,862 + 1.9
581,882 - 0.4
581,889 - -0.1
581,900 + -0.1
581,912 - 0.7
581,956 + 0.5
581,978 + 0.6
581,983 + -0.3
581,985 - 2.8
581,989 - -0.3
581,993 + 1.8
581,994 - 1.0
582,001 + -0.6
582,007 - -1.2
582,014 + 0.1
582,023 - 0.3
582,026 + 0.5
582,032 + 0.5
582,037 - 1.0
582,039 - 1.5
582,113 - -0.8
582,310 + 0.5
582,311 + -0.0
582,312 + 2.1
582,580 + 2.1
582,721 + 11767 mRNA_3399 0.13 -0.5
582,753 - 11767 mRNA_3399 0.13 0.6
582,921 - 11767 mRNA_3399 0.18 -1.4
582,942 - 11767 mRNA_3399 0.19 -0.7
582,944 + 11767 mRNA_3399 0.19 2.7
583,018 - 11767 mRNA_3399 0.21 -1.2
583,039 + 11767 mRNA_3399 0.22 0.8
583,172 + 11767 mRNA_3399 0.26 0.8
583,332 + 11767 mRNA_3399 0.30 1.0
583,333 - 11767 mRNA_3399 0.30 0.4
583,456 - 11767 mRNA_3399 0.34 -0.9
583,457 + 11767 mRNA_3399 0.34 0.9
583,459 - 11767 mRNA_3399 0.34 1.9
583,469 + 11767 mRNA_3399 0.34 -0.4
583,469 + 11767 mRNA_3399 0.34 0.9
583,471 + 11767 mRNA_3399 0.34 2.1
583,598 - 11767 mRNA_3399 0.38 1.1
583,633 - 11767 mRNA_3399 0.39 -0.4
583,834 + 11767 mRNA_3399 0.45 0.7
583,931 + 11767 mRNA_3399 0.48 2.6
584,071 + 11767 mRNA_3399 0.52 1.5
584,082 + 11767 mRNA_3399 0.52 -0.3
584,166 + 11767 mRNA_3399 0.55 0.5
584,195 - 11767 mRNA_3399 0.56 0.4
584,325 - 11767 mRNA_3399 0.59 -1.3
584,494 - 11767 mRNA_3399 0.64 1.5
584,498 - 11767 mRNA_3399 0.64 0.3
584,589 + 11767 mRNA_3399 0.67 -1.6
584,873 - 11767 mRNA_3399 0.75 0.5
584,957 - 11767 mRNA_3399 0.78 1.0
585,004 - 11767 mRNA_3399 0.79 1.7
585,100 + 11767 mRNA_3399 0.82 -2.0
585,100 - 11767 mRNA_3399 0.82 -1.8
585,220 + 11767 mRNA_3399 0.85 -0.7
585,303 - 11767 mRNA_3399 0.88 0.4
585,320 + 11767 mRNA_3399 0.88 -1.4
585,362 + 11767 mRNA_3399 0.90 -1.0
585,451 + -0.8
585,474 - -1.1
585,514 - -0.5
585,613 - 0.3
585,629 + 0.3
585,638 + 0.9
585,670 + 1.0
585,767 + -0.5
585,777 - 0.2
585,792 - -0.1
585,803 + -0.5
586,039 - 11768 mRNA_3400 0.12 -0.8