Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3377

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528897 to 531251 11744 mRNA_3377: 11745 - KOG1516 Carboxylesterase and related proteins, at 531386 to 533428 11745 mRNA_3378: 11746 - KOG1516 Carboxylesterase and related proteins, at 533955 to 535983 11746

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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530,412 + 11744 mRNA_3376 0.64 0.3
530,414 - 11744 mRNA_3376 0.64 -0.4
530,419 + 11744 mRNA_3376 0.65 -1.3
530,439 - 11744 mRNA_3376 0.65 2.5
530,569 + 11744 mRNA_3376 0.71 -1.2
530,694 - 11744 mRNA_3376 0.76 -0.1
530,736 + 11744 mRNA_3376 0.78 0.8
531,106 - -2.7
531,285 + -0.6
531,286 - 0.6
531,481 - -0.6
531,553 - -0.7
531,598 - 11745 mRNA_3377 0.10 0.5
531,687 + 11745 mRNA_3377 0.15 1.0
531,911 + 11745 mRNA_3377 0.26 0.2
532,134 + 11745 mRNA_3377 0.37 -0.0
532,363 - 11745 mRNA_3377 0.48 -1.5
532,612 + 11745 mRNA_3377 0.60 -0.6
532,612 + 11745 mRNA_3377 0.60 0.9
532,622 + 11745 mRNA_3377 0.60 0.1
532,635 + 11745 mRNA_3377 0.61 1.0
532,816 + 11745 mRNA_3377 0.70 -0.1
532,824 + 11745 mRNA_3377 0.70 -0.9
532,881 - 11745 mRNA_3377 0.73 -3.1
532,924 - 11745 mRNA_3377 0.75 -0.5
532,924 - 11745 mRNA_3377 0.75 0.4
532,925 + 11745 mRNA_3377 0.75 0.6
532,927 - 11745 mRNA_3377 0.75 -1.3
532,949 - 11745 mRNA_3377 0.77 1.7
533,086 + 11745 mRNA_3377 0.83 1.5
533,088 - 11745 mRNA_3377 0.83 -0.1
533,089 + 11745 mRNA_3377 0.83 0.0
533,308 - 1.9
533,453 - -0.1
533,453 - -1.0
533,524 - -1.3
533,608 - 2.5
533,990 + -0.4
534,033 - -1.9
534,080 - -3.0
534,399 - 11746 mRNA_3378 0.22 1.7