Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3344

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433717 to 434732 11711 mRNA_3344: 11712 - Hypothetical Protein, at 435281 to 435909 11712 mRNA_3345: 11713 - Hypothetical Protein, at 436771 to 439819 11713

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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434,344 - 11711 mRNA_3343 0.62 -0.5
434,349 - 11711 mRNA_3343 0.62 -0.8
434,435 + 11711 mRNA_3343 0.71 -0.2
434,470 - 11711 mRNA_3343 0.74 -0.7
434,627 + 11711 mRNA_3343 0.90 -0.1
434,627 + 11711 mRNA_3343 0.90 -0.4
434,637 + 3.0
434,637 + 0.4
434,642 - 0.4
434,653 + 1.2
434,758 - -0.8
434,771 - 1.1
434,771 - -1.7
434,780 - -0.9
434,788 - 0.2
434,788 + -1.2
434,793 - -0.5
434,793 - -0.5
434,794 - 0.5
434,795 - -0.9
434,797 - -1.6
434,798 - 0.4
434,801 + 1.4
434,806 - 0.3
434,806 - -0.2
434,808 - -0.8
434,810 + -0.4
434,810 - 0.5
434,810 - 0.0
434,811 - -0.7
434,811 - -0.7
434,811 - -0.3
434,814 + -2.2
434,818 - -0.7
434,818 + -0.1
434,820 - 0.6
434,825 + 1.1
434,826 + -0.2
434,835 - 0.3
434,836 + -0.0
434,838 + 0.7
434,839 - 0.4
434,846 + 0.7
434,847 + 1.8
434,851 + 0.2
434,859 + -2.0
434,861 + -1.9
434,862 - -0.7
434,864 + 0.6
434,864 + 0.4
434,901 - -0.4
434,915 - 1.4
434,932 - 0.7
434,933 + 0.0
434,936 + -0.2
434,965 - 1.6
434,968 - 1.4
434,972 - 1.1
434,980 + -0.1
434,982 + -1.1
434,985 - -0.2
434,989 + 0.9
434,994 - 0.6
435,007 - 0.4
435,007 + 0.1
435,008 - 1.2
435,009 + 2.1
435,009 - -0.1
435,014 - 1.9
435,017 - 2.5
435,021 - 0.8
435,022 + -0.2
435,022 + -0.2
435,022 + 0.2
435,022 + 0.7
435,031 - -0.4
435,037 + 0.7
435,039 - -0.4
435,041 - 0.7
435,043 + 1.0
435,044 + -0.1
435,055 + -0.2
435,056 - 0.8
435,057 + 0.7
435,062 - 0.1
435,062 - -0.7
435,067 - 0.6
435,068 - 0.1
435,072 - 0.7
435,077 - -1.8
435,084 - -1.7
435,089 + -0.5
435,092 - 0.5
435,101 + -0.7
435,105 + 0.5
435,184 + 0.6
435,188 - 0.0
435,214 + 0.6
435,218 + -0.6
435,242 + -0.6
435,254 - 0.7
435,270 + 1.7
435,366 - 11712 mRNA_3344 0.14 2.2
435,367 + 11712 mRNA_3344 0.14 -1.7
435,386 - 11712 mRNA_3344 0.17 0.9
435,413 + 11712 mRNA_3344 0.21 -0.2
435,415 - 11712 mRNA_3344 0.21 2.0
435,425 + 11712 mRNA_3344 0.23 0.3
435,444 + 11712 mRNA_3344 0.26 1.0
435,480 - 11712 mRNA_3344 0.32 0.6
435,551 - 11712 mRNA_3344 0.43 1.1
435,558 + 11712 mRNA_3344 0.44 0.8
435,687 + 11712 mRNA_3344 0.65 0.4
435,708 - 11712 mRNA_3344 0.68 -0.8
435,942 - 0.3
436,000 + 0.2
436,006 - -2.0
436,024 - 0.1
436,030 + -2.3
436,100 - -1.0
436,112 + 1.4
436,114 - 0.6
436,130 - -0.3
436,132 - -0.3
436,179 + -0.4
436,179 - 0.4
436,180 + -2.3
436,202 - -0.5
436,212 - 0.4
436,229 - 0.2
436,235 + 0.3
436,238 + -0.1
436,240 + 0.1
436,240 + 0.0
436,242 - 0.4
436,242 - -1.7
436,242 - 0.8
436,250 + 0.6
436,250 + -1.9
436,272 + -1.9
436,275 + 0.9
436,278 + 0.3
436,288 + 0.0
436,297 - -1.4
436,303 + 0.2
436,320 + -1.1
436,321 - -0.0
436,325 + -1.2
436,329 + -0.2
436,332 - -0.5
436,332 - 1.5
436,339 - 0.4
436,342 - -0.1
436,356 - -1.2
436,358 + 1.5
436,457 - -1.0
436,458 - 1.3
436,460 + -0.6
436,471 - -0.2
436,476 - 1.2
436,494 + 0.4
436,505 + 1.2
436,508 - -0.5
436,523 + -0.2
436,526 + 0.2
436,530 - 0.9
436,532 + 1.1
436,557 + 2.0
436,674 + 1.3
436,689 - -0.5
436,787 - -2.3
436,816 + -0.3
436,839 + 0.2
436,841 + -0.9
436,875 + -2.0