Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3335

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3334: 11702 - K03936 NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, at 413797 to 414963 11702 mRNA_3335: 11703 - Hypothetical Protein, at 415078 to 415551 11703 mRNA_3336: 11704 - K07827 KRAS, KRAS2 GTPase KRas, at 415691 to 416703 11704

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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414,939 + -1.9
414,983 + -0.4
415,091 - 1.0
415,260 - 11703 mRNA_3335 0.38 0.1
415,329 - 11703 mRNA_3335 0.53 -2.6
415,362 - 11703 mRNA_3335 0.60 -0.1
415,387 + 11703 mRNA_3335 0.65 0.8
415,392 + 11703 mRNA_3335 0.66 -0.8
415,523 + 1.0
415,530 - -0.8
415,537 + 0.3
415,682 - 0.1
415,684 + 1.4
415,688 - 1.3
415,698 + -1.2
415,700 - 0.2
415,843 - 11704 mRNA_3336 0.15 -0.1
415,849 + 11704 mRNA_3336 0.16 1.9
415,931 - 11704 mRNA_3336 0.24 -1.5
415,972 - 11704 mRNA_3336 0.28 0.9
415,979 - 11704 mRNA_3336 0.28 0.8
416,076 - 11704 mRNA_3336 0.38 0.8
416,076 - 11704 mRNA_3336 0.38 -1.2
416,118 + 11704 mRNA_3336 0.42 -0.1
416,310 - 11704 mRNA_3336 0.61 -0.0
416,486 + 11704 mRNA_3336 0.78 -1.7
416,522 + 11704 mRNA_3336 0.82 2.7