Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3327

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3326: 11694 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 400658 to 402328 11694 mRNA_3327: 11695 - HMMPfam-BAG domain-PF02179,SUPERFAMILY--SSF63491, at 402652 to 404277 11695 mRNA_3328: 11696 - BLAST YALIA101S10e03422g1_1 [Yarrowia lipolytica], at 404411 to 405058 11696

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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401,665 + 11694 mRNA_3326 0.60 0.5
401,904 - 11694 mRNA_3326 0.75 -0.4
402,369 - -1.5
402,470 + -0.2
402,509 + -0.4
402,569 + 0.0
402,588 + -0.2
402,708 - 1.1
403,050 - 11695 mRNA_3327 0.24 0.1
403,078 - 11695 mRNA_3327 0.26 3.0
403,085 + 11695 mRNA_3327 0.27 0.1
403,190 + 11695 mRNA_3327 0.33 0.2
403,334 + 11695 mRNA_3327 0.42 0.2
403,611 + 11695 mRNA_3327 0.59 -0.5
404,042 - 11695 mRNA_3327 0.85 -0.8
404,165 + 1.3
404,188 - 0.1
404,220 + -3.0
404,353 - -0.1
404,494 + 11696 mRNA_3328 0.13 2.5
404,498 + 11696 mRNA_3328 0.13 -0.1