Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3322

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3322: 11690 - HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923, at 393973 to 395198 11690 mRNA_3323: 11691 - HMMPfam-RTA1 like protein-PF04479, at 395494 to 396830 11691

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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393,363 - 0.8
393,456 - -0.8
393,459 + 0.4
393,459 + -0.2
393,462 - -0.4
393,629 - -1.1
393,634 + -1.1
393,641 - -0.1
393,745 - 0.1
393,897 - -0.6
393,906 - -1.5
393,906 - 2.0
393,925 + 1.6
394,946 + 11690 mRNA_3322 0.79 0.5
394,988 + 11690 mRNA_3322 0.83 0.5
395,114 - -0.6
395,139 + -0.6
395,156 + 1.2
395,247 - -0.1
395,254 - 1.2
395,254 - 0.1
395,259 + -0.3
395,263 + -0.4
395,266 - -0.9
395,268 + -1.9
395,275 + -1.4
395,284 - -0.5
395,286 + -0.1
395,299 - -0.8
395,306 + -0.2
395,307 - -0.4
395,321 - 2.2
395,358 + 0.8
395,363 + 0.9
395,367 - -0.3
395,373 + -1.9
395,379 + 0.2
395,388 - -0.2
395,389 + 1.2
395,393 + -1.2
395,395 + 0.1
395,396 - 1.6
395,401 + 0.5
395,416 + 0.4
395,422 - 0.6
395,433 + 1.1
395,452 + 0.8
395,542 - 0.2
395,576 + 0.9
395,586 + 1.5
395,590 - -0.2
395,696 + 11691 mRNA_3323 0.15 0.2
395,707 - 11691 mRNA_3323 0.16 0.7
395,709 + 11691 mRNA_3323 0.16 -2.1
395,718 + 11691 mRNA_3323 0.17 0.5